Pseudonocardia sp. AL041005-10: WY02_01945
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Entry
WY02_01945 CDS
T04051
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psea
Pseudonocardia sp. AL041005-10
Pathway
psea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WY02_01945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psea03019
]
WY02_01945
03400 DNA repair and recombination proteins [BR:
psea03400
]
WY02_01945
Enzymes [BR:
psea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WY02_01945
Messenger RNA biogenesis [BR:
psea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WY02_01945
DNA repair and recombination proteins [BR:
psea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
WY02_01945
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
SaeA_1st
TrwC
Motif
Other DBs
NCBI-ProteinID:
ALE77431
LinkDB
All DBs
Position
complement(552950..554806)
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AA seq
618 aa
AA seq
DB search
MPEPEPVPERVHSSDPHEILRRVFGYDAFRGEQQAIVEQVTGGGDALVLMPTGGGKSLCY
QVPALARPGTGVVVSPLIALMQDQVDALRALGVRAGFLNSTQDADERRLTEQEFLAGELD
LLYLAPERLRVEATVRLLERGRIALFAIDEAHCVAQWGHDFRPDYLLLSELPKRWPDVPR
IALTATATDATRTEIAQRLELTGAQAFVASFDRPNIQYRIVAKNEPRRQLLELLRSEHAG
DAGIVYCLSRRSVEQTAEFLTAQGIRALPYHAGLDASVRRENQSRFLREDGLVMCATIAF
GMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGEPSTAWLAYGLADVVQQRKMIDDGE
GDAAHKRRLAQHLDAMLALCETTECRRAQLLRYFGQKPAAQRCGNCDTCLTPVSSWDGTV
AAQKVLSTVWRLKKERNQEFGAGQVVDILLGKRTPKVDQHRHHELSVFGVGTELTDVAWR
NVLRQLVARGLLTVGGNYSTLRFTDESPAAMRGEQKVMLRSEPERAARSSRSRGGSKQAV
EMPAELAPVFERLRAWRAATAKEQGVPAYVIFHDATLREIATRSPADRAALGTISGIGEG
KLARYGDQVIDVLHGADS
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
ctgccggagccggagccggtcccggagcgggtgcacagcagcgacccgcacgagatcctg
cgccgcgtcttcggctacgacgcgttccgcggcgagcagcaggcgatcgtcgagcaggtc
accggcggcggggacgcgctggtgctcatgccgaccggtggcggcaagtcgctctgctac
caggtaccggcgctggcccggccgggcaccggggtcgtggtgtcgccgctgatcgcgctg
atgcaggaccaggtcgacgcgttgcgcgcgctcggggtgcgggccggattcctcaactcc
acccaggacgccgacgagcgccgcctcaccgagcaggagttcctcgcgggcgagctggac
ctgctctacctcgccccggagcggctgcgtgtcgaggccaccgtgcggctgctcgaacgc
ggccggatcgccctgttcgcgatcgacgaggcgcactgcgtcgcgcagtggggacacgac
ttccggcccgactacctgctgctctccgagctgccgaagcgctggccggacgtcccgcgg
atcgcactgaccgcgaccgcgaccgacgcgacccgcaccgagatcgcgcagcgtctggag
ctgaccggggctcaggccttcgtcgcgagcttcgaccggcccaacatccagtaccggatc
gtcgcgaagaacgagccgcgccgtcagctgctggagctgctgcgctccgagcacgccggg
gacgcggggatcgtctactgcctgtcgcgcaggtcggtcgagcagaccgcggagttcctc
accgcgcaggggatccgggcactgccgtaccacgcggggctcgacgcgtcggtgcgccgg
gagaaccagtcccggttcctgcgcgaggacggcctggtcatgtgcgcgacgatcgcgttc
ggcatgggcatcgacaagcccgacgtccgcttcgtcgcccacctcgaccttccgaagtcc
gtggagggctactaccaggagaccgggcgggccggccgcgacggcgagccgtcgacggcg
tggctggcctacgggctcgccgacgtcgtccagcaacgcaagatgatcgacgacggcgag
ggcgacgccgcgcacaagcggcgcctggcccagcacctggacgcgatgctcgcgctgtgc
gagaccaccgagtgccgccgggcgcagctgctgcgctacttcgggcagaagcccgctgcc
cagcggtgcgggaactgcgacacctgtctgacgccggtgtcgtcgtgggacggcacggtc
gcggcgcagaaggtgctgtcgacggtgtggcggctgaagaaggagcgcaaccaggagttc
ggcgccgggcaggtcgtcgacatcctgctgggcaagcgcaccccgaaggtcgaccagcac
cgccaccacgagctgtcggtgttcggcgtcgggaccgagctgaccgacgtcgcgtggcgc
aacgtcctgcgccagctcgtcgcgcgcgggctgctgaccgtcggcgggaactactcgacg
ctgcggttcaccgacgagtccccggccgcgatgcgtggcgagcagaaggtcatgctgcgc
tccgagccggaacgcgcggcgcggtcgtcgcggtcgcggggcgggtcgaagcaggccgtg
gagatgccggccgagctcgcgccggtgttcgagcggctccgggcatggcgggcggcgacg
gcgaaggagcagggcgtccccgcctacgtgatcttccacgacgcgacgctgcgtgagatc
gcgacgcggtcccccgccgaccgggccgcgctgggcacgatctccgggatcggcgagggc
aagctcgcgcgctacggcgaccaggtgatcgacgtgctgcacggggccgactcgtga
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