Pseudonocardia sp. AL041005-10: WY02_10895
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Entry
WY02_10895 CDS
T04051
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psea
Pseudonocardia sp. AL041005-10
Pathway
psea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WY02_10895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psea03021
]
WY02_10895
03019 Messenger RNA biogenesis [BR:
psea03019
]
WY02_10895
Transcription machinery [BR:
psea03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
WY02_10895
Messenger RNA biogenesis [BR:
psea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
WY02_10895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
AAA_22
NACHT
Motif
Other DBs
NCBI-ProteinID:
ALE78859
LinkDB
All DBs
Position
complement(2414045..2416423)
Genome browser
AA seq
792 aa
AA seq
DB search
MSETDLAGTGTASAEAAPRRRGGLSGMVLAELRQLATELNVPDISGMRKGDLIAAIKERQ
GGAAAAPAKKPKAKADPAATTGSDGADAPQLALGDTAAAPAGNGSAAPAAPQAPAEQAGD
QGGQAGQAEAPAPRTRRRRAATRPAGAPDATVTDAATGAPDTSAGNGAAPAVAESAPAAA
PEQAAPAASAPEKADSTPAPVEERREDADGAGRRGRTRRRGQADDNGQKDTGSQSAPKDT
ATDAGQRDAGQKDARRDADGDDAGTDGDRRRGRGADRNAERGADRNGGDRTGEGRDDNGR
GNGDNGRGGRNRDGDDSGRGNRGNRNNDRTGDRGDNRGERNGDRNNDRNGDRNNDRNNDR
GADRNDFRDDDGDDGDGRGRRGRRFRDRRRGRDRERTGGGATGGGVDTEIRDDDVLLPVA
GIVDILDNYAFVRTTGYLSGPTDVYVSMSMVRKNGLRRGDAITGAVRQPREGEQQRQKFN
PLVRVDSINGRDPEAARNRPEFTKLTPLYPNERLRLETDPSQLTTRVIDLIMPVGKGQRA
LIVSPPKAGKTTIMQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDR
PPADHTAVAELSIERAKRLVEMGHDVVVLLDNITRLGRAYNLAAPASGRILSGGVDSTAL
YPPKRFLGAARNIEDGGSLTIFATALVETGSTMDTVIFEEFKGTGNAELKLDRKIADKRI
FPAIDVGDSSTRKEELLMSPDEHAVMVKLRRVLAALDDQQALDLVLSRLKKTKTNIEFLM
QVAKNTPGKDED
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagaccgatctcgccggtaccgggaccgcgtcggccgaggcggcgccccgccga
cgcggcggcctgtccggcatggtgctggccgagctgcgccagctggccaccgagctgaac
gtcccggacatctccggcatgcggaagggcgacctgatcgcggccatcaaggagcgtcag
ggcggagcggcggcggcccccgcgaagaagccgaaggcgaaggcggaccccgccgccacc
accggctccgacggtgcggacgcgccgcagctcgccctcggcgacaccgccgcggccccc
gccggcaacggctccgccgcgccggccgccccccaggcacccgccgagcaggccggtgac
cagggcggacaggccgggcaggccgaggcccccgcgccgcgcacccgtcgtcgccgtgct
gcgacccgtccggccggcgcccccgacgccaccgtgaccgacgccgccaccggcgccccc
gacacctccgccggcaacggtgcggccccggccgtcgccgagagcgccccggccgccgcg
cccgagcaggccgcccccgccgcgagcgcgccggagaaggccgacagcaccccggccccg
gtcgaggagcgccgtgaggacgccgacggcgccggtcgtcgtggccggacccgccgccgc
gggcaggccgacgacaacggccagaaggacaccggctcccagagcgccccgaaggacacc
gccacggacgcgggccagcgggacgcgggccagaaggacgcccgtcgcgacgccgacggc
gacgacgccggcaccgacggcgaccgccgtcgcggccgtggggcggaccgcaacgccgag
cgcggtgccgaccgcaacggtggcgaccgcaccggtgagggccgcgacgacaacggccgc
ggcaacggcgacaacggccgtggcgggcgcaaccgcgacggcgacgactccggccgcggc
aaccgcgggaaccgcaacaacgaccggaccggcgaccgcggtgacaaccgtggcgagcgg
aacggtgaccggaacaacgaccgcaacggtgaccggaacaacgaccggaacaacgaccgc
ggtgccgaccggaacgacttccgcgacgacgacggcgacgacggtgacggccgcggccgc
cgtggccgccgcttccgcgaccgccgtcgcggccgggaccgcgagcgcaccggtggcggc
gccaccggcggtggcgtggacaccgagatccgcgacgacgacgtcctgctcccggtcgcc
ggcatcgtggacatcctcgacaactacgcgttcgtccggaccaccggctacctgtccggc
ccgaccgacgtctacgtgtcgatgtcgatggtccgcaagaacggactgcggcgcggcgac
gccatcaccggcgccgtccgtcagccccgcgagggcgagcagcagcggcagaagttcaac
ccgctggtgcgcgtcgactcgatcaacgggcgggacccggaggccgcgcgcaaccggccc
gagttcaccaagctgaccccgctctaccccaacgagcggctccgcctggagaccgacccg
tcgcagctgaccacccgcgtgatcgacctgatcatgccggtcggcaaggggcagcgtgcg
ctgatcgtctccccgcccaaggcgggcaagacgacgatcatgcagaacatcgcgaacgcg
atcaccacgaacaaccccgagtgccacctcatggtcgtcctcgtcgacgagcggcccgag
gaggtcaccgacatgcagcggtcggtgaagggcgaggtcatcgcctcgaccttcgaccgc
ccgccggcagaccacaccgccgtcgccgagctgtccatcgagcgggccaagcgcctggtc
gagatggggcacgacgtcgtcgtcctgctggacaacatcacccgcctcgggcgcgcctac
aacctggccgcgcccgcatcgggccggatcctgtccggtggtgtcgactccacggcgctg
tacccgccgaagcgcttcctcggcgccgcgcgcaacatcgaggacggtggctcgctcacc
atcttcgcgaccgcgctggtcgagaccgggtccacgatggacacggtgatcttcgaggag
ttcaagggcaccggcaacgccgagctcaagctggaccggaagatcgccgacaagcggatc
ttcccggccatcgacgtcggcgactcgagcacccgcaaggaggagctcctgatgtcgccc
gacgagcacgcggtgatggtgaagctccgccgcgtcctcgccgcgctcgacgaccagcag
gcgctcgacctggtgctcagccggctcaagaagaccaagaccaacatcgagttcctgatg
caggtcgccaagaacacccccggcaaggacgaggactag
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