Pseudonocardia sp. AL041005-10: WY02_24480
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Entry
WY02_24480 CDS
T04051
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psea
Pseudonocardia sp. AL041005-10
Pathway
psea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WY02_24480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psea03019
]
WY02_24480
03016 Transfer RNA biogenesis [BR:
psea03016
]
WY02_24480
Enzymes [BR:
psea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
WY02_24480
Messenger RNA biogenesis [BR:
psea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
WY02_24480
Transfer RNA biogenesis [BR:
psea03016
]
Prokaryotic type
tRNA degradation factors
WY02_24480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
S1_RRP5
KH_KhpA-B
KH_PNO1_2nd
KH_NusA_1st
Motif
Other DBs
NCBI-ProteinID:
ALE81019
LinkDB
All DBs
Position
5190753..5193038
Genome browser
AA seq
761 aa
AA seq
DB search
MTDVISEDGVHESTAVIDNGTYGTRTVRFETGRLARQAAGSVVAYLDDETMLLSATTASK
RPKDQFDFFPLTVDVEERMYAAGRIPGSFFRREGRPGTDAILTCRLIDRPLRPSFVDGLR
NEIQVVVTVMSLDPKDPYDVVAINAASASTQLAGLPFSGPVGGVRVALIANEAGTDTQWV
AFPTHDQLDRAAFDMVVAGRIVGDDVAIMMVEAEATENTIDLVAGGATAPTEGVVADGLE
AAKPFIRSLCVAQQQLADVAAKPTADYPVFPAYQPDAFEAVSEAVEQELAQALTIAGKQE
RETRTDEIKASVLDKLGERFVGRESELGNAFRSLNKKLVRRRILTDQVRIDGRGLTDIRP
LSAEVEVVPRAHGSALFERGETQIMGVTTLNMLRMEQQIDQLGPETRKRYLHHYNFPPYS
TGETGRVGSPKRREIGHGALAERALIPVLPNRDEFPYAIRQVSEALGSNGSTSMGSVCAS
TMSLLNAGVPLKAPVAGIAMGLVSDEVDGQTRYVALTDILGAEDAFGDMDFKVAGTKEFV
TALQLDTKLDGIPSEVLAAALNQAKDARLTILEVIGEAIDGPDEMSKYAPRVTAVKVPVD
KIGEVIGPKGKMINSITEKTGADISIEDDGTIYVGANDGPSAEEAIGMINAIANPQLPKV
GERFLGTVVKAAAFGAFVSLVPGKDGLVHISKLGNGKRISKVEDVVKVGDKLRVEVTDID
NRGKISLIPVVEESASADVTGTPAAEGAVDAEAPAEAANPS
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgtcatctccgaggacggcgtgcacgagagcaccgccgtcatcgacaacggc
acctacggcacccgcaccgtccggttcgagaccggccggctcgcccgccaggccgccggg
tccgtcgtcgcgtacctcgacgacgagaccatgctgctgtccgccacgaccgcctcgaag
cggccgaaggaccagttcgacttcttcccgctcacggtggacgtcgaggagcggatgtac
gccgcgggccggatccccggctcgttcttccgccgcgagggccgcccgggcaccgacgcg
atcctgacctgccgcctcatcgaccgcccgctgcgcccgtccttcgtggacggcctgcgc
aacgagatccaggtcgtcgtgacggtcatgtcgctcgacccgaaggacccctacgacgtc
gtggcgatcaacgccgcgtcggcgtccacccagctcgccggcctgccgttctccggcccg
gtcggcggcgtccgcgtcgcgctcatcgcgaacgaggcgggcaccgacacccagtgggtc
gccttcccgacccacgaccagctcgaccgcgccgcgttcgacatggtcgtcgcgggccgc
atcgtcggtgacgacgtcgcgatcatgatggtcgaggccgaggccaccgagaacaccatc
gacctcgtcgccggtggggccaccgccccgaccgagggtgtcgtcgcggacgggctggag
gcggccaagccgttcatccgcagcctgtgcgtcgcccagcagcagctggccgacgtcgcg
gccaagccgaccgccgactacccggtgttcccggcctaccagccggacgccttcgaggcg
gtctccgaggccgtcgagcaggagctggcgcaggcgctgaccatcgccggcaagcaggag
cgcgagacccggaccgacgagatcaaggcgtcggtgctggacaagctcggcgagcgcttc
gtcggccgcgagtccgagctcggcaacgcgttccgctcgctgaacaagaagctggtccgc
cgccgcatcctgaccgaccaggtccggatcgacggccgtggcctgaccgacatccggccg
ctgtcggccgaggtcgaggtcgtcccgcgggcgcacggctcggcgctgttcgagcgcggc
gagacccagatcatgggtgtcaccacgctgaacatgctccgcatggagcagcagatcgac
cagctggggccggagacgcgcaagcgctacctgcaccactacaacttcccgccgtactcg
accggtgagaccggccgcgtcggctcgccgaagcgccgcgagatcggccacggcgcactc
gccgagcgggccctgatcccggtcctgccgaaccgcgacgagttcccgtacgcgatccgg
caggtctccgaggctctgggctcgaacggctcgacgtcgatgggctcggtctgcgcgtcc
acgatgtcgctgctcaacgccggtgtgccgctgaaggcgccggtcgcgggcatcgcgatg
ggcctggtgtccgacgaggtcgacggccagacgcgttacgtcgcgctgaccgacatcctc
ggtgccgaggacgcgttcggtgacatggacttcaaggtcgccggcaccaaggagttcgtc
acggcgctgcagctggacaccaagctggacggcatcccgtccgaggtgctcgccgccgcg
ctgaaccaggccaaggacgcccgtctgaccatcctcgaggtgatcggcgaggccatcgac
ggcccggacgagatgagcaagtacgcgccgcgggtcaccgcggtgaaggtcccggtcgac
aagatcggcgaggtcatcggcccgaagggcaagatgatcaactcgatcaccgagaagacc
ggcgccgacatctcgatcgaggacgacggcacgatctacgtcggtgcgaacgacggcccc
tccgcggaggaggcgatcggcatgatcaacgcgatcgccaacccgcagctgcccaaggtc
ggcgagcggttcctgggcacggtggtcaaggccgccgcgttcggtgccttcgtctcgctc
gtccccggcaaggacggcctggtccacatctcgaagctcggcaacgggaagcggatcagc
aaggtcgaggacgtcgtcaaggtcggcgacaagctgcgcgtcgaggtcaccgacatcgac
aaccgcggcaagatctcgctgatcccggtggtcgaggagtccgcctccgcggacgtcacc
gggaccccggccgccgagggcgccgtcgatgccgaggccccggccgaggccgccaacccg
agctga
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