Pseudorhodobacter turbinis: EOK75_03235
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Entry
EOK75_03235 CDS
T05954
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pseb
Pseudorhodobacter turbinis
Pathway
pseb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pseb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EOK75_03235 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pseb03400
]
EOK75_03235 (mfd)
Enzymes [BR:
pseb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EOK75_03235 (mfd)
DNA repair and recombination proteins [BR:
pseb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EOK75_03235 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_30
DUF4410
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QCO54882
UniProt:
A0A4P8EDP8
LinkDB
All DBs
Position
complement(694983..698417)
Genome browser
AA seq
1144 aa
AA seq
DB search
MTDHITLGGAPEGFDARLVAKELARGVPVIHVARDDKRLEAMRDALAVMAPEVVVLELPA
WDCLPYDRVSPNPDIISRRMATLAALAQGVPGAFVLLTTLNAATQRLPAREVLREASFAA
TVGHRLNEENLRNFLTRMGFTPSPTVAEPGDYAIRGGIIDIYPPGPGGPVRLDLFGDVLD
GARRFDPQTQRTTEKLKSLEFAPVSEVILDEAAIARFRQNYRVEFGAGGSDDPLYEAVSA
GRKHQGMEHWLPFFHATMETIFDYVPDASVMLDDQVPPARLSRWEGIDDQYDARMEAMRA
KGRLDTVYKPVAPALLYLNEAAWDQAVAGRRVIQLSPLAQSPGPGVLDAGGRMGRSFAPE
RQQENISLFSALADHIKTLRKDGNVVIASWSEGARERLRGLIADQGIEGAVEVSDFRDVI
GKAGIFLMVWPLEAGFTAPGVAVISEQDVLGDRLVGKPKRKRKADNFLRNADTLSPGDLV
VHVEHGVGRYHGLEMITALGAPHECLAIEYAENAKLYLPVENIELLSRYGHEDGLLDRLG
GGAWQAKKAKLKARIREIAERLMRIAAERHLRKAPVLEAPHSMWEAFAARFPYTETEDQL
TAITDVITDLEAGSPMDRLVVGDVGFGKTEVAMRGAFVAAMSGMQVAVIAPTTLLARQHY
RSFVERFRGFPINVKPLSRFVSAKEASGTRAGISDGTVDIVVGTHAVLAKAIKFKNLGLL
VIDEEQHFGVSHKERLKEMRSDVHVLTLTATPIPRTLQLSLTGVRDLSIIATPPVDRLAI
RTYVSEFDTVTIREALLRERYRGGQSFFVVPRISDLPFVEDFLKTQVPEVNYLVAHGQLA
AGDLDQRMNDFYDGKHDVLVATSIVESGLDIPTANTMIVHRADMFGLSQLYQIRGRVGRA
KTRAYCYLTTKPRVPLTPHAMKRLRLLGSLDSLGAGFNLASHDLDLRGAGNLLGEEQSGH
IKEVGYELYQSMLEETIAKLRSGEISGLAEVDDQWAPNINLGVPVLIPEVYVPDLDLRLG
LYRRLSALTTKVELEGFAAELIDRFGPLPREVNTLMLVVRIKAMCKRAGIARLDAGPKGA
TVQFHNDKFANPAGLVDFIKTQAGARVSGNKIVLVQDWKTEGERIKGAFAIAKALAEKLL
ELKK
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgacagatcatatcacactgggcggagcgcccgaaggtttcgacgcaaggctggtggcc
aaggaattggcgcgcggtgttcctgttatccatgtcgcacgcgatgacaaacggctggag
gcgatgcgcgatgcgctggcggtgatggcccccgaggttgtggtcctggagctgccagcc
tgggattgcttgccctatgatcgggtgtcaccgaaccctgatattatctctcggcggatg
gcgacattggcggcgctggcgcaaggggtgccgggggcatttgtgctgctgaccacgctg
aacgccgcgacgcaacgccttcctgcacgtgaggttctgcgcgaggcgtcctttgccgcg
accgtcggccaccgcttgaatgaggaaaacctgcgcaactttttgacgcgcatgggcttc
acccccagccccacggtggcagagccgggcgattatgcgattcgcggcggtatcattgat
atctatccgccgggtcccggtgggccggtgcggctggatctttttggtgatgtgcttgac
ggggcgcggcggtttgatccgcaaacccagcgcaccacggaaaagctgaaatcgttggaa
ttcgcgccggtgtcagaggtgatcctcgatgaggcggcgatcgcgcggtttcgccagaac
taccgtgtagagttcggcgcgggcgggtcggatgatccgctgtatgaggcggtaagcgcg
gggcgcaaacatcaggggatggagcattggctgccgttcttccacgcgacgatggaaacg
atattcgactatgttccagatgcgtcggtcatgttggacgaccaagtcccccccgcacgg
ctatcgcgttgggaagggatcgacgaccagtatgatgcgcggatggaggcgatgcgtgcc
aaggggcggcttgatacggtctataaacctgtcgcgcccgcgctgctttatctgaatgag
gcggcttgggatcaggccgttgcgggacgtcgggtgatccagttgtcgcccttggcacaa
tcaccggggccgggtgtgttggatgcgggcgggcggatggggcgcagtttcgcgccggaa
cggcaacaggaaaacattagccttttcagcgcacttgccgatcatatcaagacattgcgc
aaagatggaaatgtggtgatcgccagctggtccgagggcgcgcgagagcggcttcgcggg
ctgatcgccgatcaggggattgagggcgcggtcgaggtttccgattttcgcgacgtcatc
ggaaaggccggaattttcctgatggtctggccgctggaggcagggtttaccgcgcccggc
gtggccgtgatttcggaacaggacgtgttgggggatcggctggtcggcaagcccaagcgt
aaacgcaaggccgataacttcctgcgcaacgctgacacgttgtcgccgggtgatctggtg
gtgcatgttgaacatggcgtcgggcgctatcacgggttggagatgataaccgcccttggt
gcgccgcatgaatgtctggccattgaatacgccgagaatgccaagctttatcttcccgtt
gaaaatatcgaattgcttagccgttatggccatgaagacgggcttttggaccggcttggc
ggtggcgcttggcaggcgaagaaagccaagctcaaggcgcgcatccgtgagatcgccgaa
cgcttgatgcggattgccgccgaacgccatctgcgcaaagccccagttctggaagcaccc
catagcatgtgggaggcatttgccgcgcgctttccctataccgaaaccgaggaccagctg
actgcgatcaccgatgtcattacagacctagaggccggcagtccgatggatcgtttggtg
gttggcgatgtcggctttggcaagaccgaggtcgcgatgcggggcgcgtttgttgcggcg
atgtcggggatgcaggtggcggtgatcgcgccgacaacgcttttggcgcgccaacactac
cgcagctttgttgaaagatttcgcggatttccgattaatgtcaaacctttgtcgcgcttt
gttagtgcaaaagaggcaagcggcacgcgggcaggaatttcggatggcaccgttgatatt
gtcgtcggcacccatgcggttttggccaaggcgattaaattcaaaaacctcggcctgttg
gtgatcgatgaggagcagcatttcggcgtcagccataaggaacggctgaaagagatgcgc
tcagacgtgcatgtgttgacgctgacggcaacgcctattccgcgcaccttgcagctgtca
ctgacgggtgtgcgcgacctttccatcatcgcaacaccgccggtggaccgtctggccatc
cgcacctatgtgagcgaattcgatacagttaccatccgcgaggcgcttttgcgtgaacgc
tatcgtggtggacagtcgttctttgtggtgccacggatttccgatttgcccttcgttgaa
gatttcttgaaaacccaagtgccggaagtgaattatctggtggcacatgggcagttggcg
gcaggcgacctcgatcagcgtatgaatgatttttacgatggaaaacatgatgttctggtt
gcaacctctatcgttgaatcaggtctggatatccccactgcgaatacgatgatcgttcac
cgcgccgatatgttcggccttagccagctttaccaaatccggggccgtgtgggccgtgcg
aaaacgcgggcctattgttatttgaccaccaagccgcgcgtgccgctgacaccgcatgcg
atgaaacggttacggcttttgggcagccttgacagccttggtgccgggttcaatttggcg
agccatgaccttgacttgcgcggtgcaggcaaccttttgggtgaggaacaatccggtcat
atcaaagaggtcggctatgagctgtaccaatccatgctggaagaaactatcgccaagctg
cggtcgggtgagatctcggggctggcagaggtggatgatcaatgggcgccgaatatcaac
cttggtgttccggtattgataccagaggtttacgttccagacctcgaccttcgtcttggc
ctgtaccgccgcctgtctgcattgaccacgaaggtcgagcttgaaggctttgctgccgaa
ttgatcgaccgtttcgggcccttgccgcgcgaggtgaataccttgatgctggtcgtgcgg
atcaaggcgatgtgcaaacgtgcaggcattgcgcggctggatgcagggccgaagggcgcg
acggttcagtttcacaacgacaaatttgccaatcctgctgggcttgtggactttatcaaa
acccaagctggcgcgcgggtttctggtaataaaatcgtgctggtgcaggactggaaaacc
gaaggtgaacggatcaagggggcctttgccattgcgaaagctttggccgagaagttgttg
gaactaaagaagtaa
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