Pseudorhodobacter turbinis: EOK75_09250
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Entry
EOK75_09250 CDS
T05954
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pseb
Pseudorhodobacter turbinis
Pathway
pseb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pseb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EOK75_09250 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pseb03019
]
EOK75_09250 (rnr)
03016 Transfer RNA biogenesis [BR:
pseb03016
]
EOK75_09250 (rnr)
Enzymes [BR:
pseb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EOK75_09250 (rnr)
Messenger RNA biogenesis [BR:
pseb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EOK75_09250 (rnr)
Transfer RNA biogenesis [BR:
pseb03016
]
Prokaryotic type
tRNA degradation factors
EOK75_09250 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
QCO55911
UniProt:
A0A4P8EFL7
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All DBs
Position
1926748..1929003
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AA seq
751 aa
AA seq
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MEKLPSKSQIVQWLADNPTLTSKRDIARAFGIKGGDLRIELKRMLKELEAEGALVKAERS
YRDPAALPPVSILKVLAPDGDGDLFGDAMEWTGEGTAPRILIITKASDPALGQGDRILAR
LEPVGGKDHNYEARLIRKLGHNPLKLLGIFRSESEGGRVVPVDKKNDKEWRVLRDGTMDA
RDGELVEAEQAGPRRMGLPQARITARLGDPSGPRAISLIAIHQHGIPDQFPDKVVAEADA
ATPAPLAKREDMRDLALVTIDPPDARDRDDAVLAMPDPDPANIGGHIVWVAIADVAHYVR
PGSELDREAKKRGNSSYFPDRVVPMLPDTLSGDLCSLHENVDRACMAVRMVLDAHGRKIS
HRFTRGMMRSVASLSYAQVQNAIDGSADDVTAPLLDDVLRPLYAAYQATKQARNERQPLD
LDLPERKIVLSDEGKVLAVDFYERLDAHKVIEEFMILANVSAAEELNRLKAPLLFRVHEE
PSPEKLQALREVAEASGFVLSKGQVLKTSHLNQLLAAAEGTEFYELINVSTLRAMTQAYY
SPQNFGHFGLALRNYAHFTSPIRRYSDLIVHRALIAAHGWGNDGLAQQDVEELAETAKHI
SDTERRSMVAERDTNDRYLAAYLADRVGAIFDGRVSGVQRFGLFVKLDDSGADGLIPIRS
VGREFFHFDADTQTLMGADTGLTIGIGQRVKVRLADAVPVTGGLILELLEIDDRALPKSH
APRGRGSPRKPGKAAAKSRAVKRKVSRQRRK
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattgccctcaaaatcacagatcgttcaatggttggctgacaaccccacgctg
acctcgaaacgcgatatcgcgcgggcctttggcatcaaaggcggggatctgcggattgag
ctgaaacgcatgctcaaagagttggaagcggaaggcgcgctggtcaaggcggagcgcagc
taccgtgaccccgccgccctgccgccggtgtccatcctcaaggtgttggcccctgacggt
gatggcgacctctttggcgatgcgatggaatggacgggtgagggcacagccccccgtatc
ctgattatcaccaaagcctctgatccggccttggggcagggcgaccgtattctggcgcgg
ctcgaacctgtgggcggcaaggaccataattacgaggcgcggctgatccgcaagctgggg
cataacccgcttaaacttttggggattttccgctctgagagcgaaggcggccgcgttgtc
cccgttgacaaaaagaacgacaaggaatggcgcgtgctgcgtgatggcacgatggacgcc
cgtgatggagagctggtcgaggccgagcaagcaggcccccgccgcatgggcctgccgcaa
gcgcgcatcaccgcccgtctgggcgacccgtccggtccgcgcgcgatttccctgatcgcg
atccatcagcatggcataccggaccaattccccgataaggtcgtggccgaggctgatgcc
gccacccccgcgcccttggccaagcgtgaggatatgcgcgatctggcgctggtcaccatc
gacccgccggatgcccgcgaccgcgatgatgcggtgctggcgatgcctgaccccgatccc
gcgaatatcggcgggcatatcgtttgggtcgcgattgccgatgtggcgcattatgtccgc
cccggatcggagctggaccgcgaggcgaaaaaacgcggcaactccagctatttccctgac
cgtgtggtgccgatgctgcccgatacgctgtcgggcgatctgtgttccctgcatgaaaat
gtggaccgcgcctgtatggcggttcgcatggtgctggacgcgcatggccgcaagatcagc
caccggtttacgcgcgggatgatgcgctctgtcgcctcgctaagctatgcgcaggtgcaa
aatgcgattgacggcagcgctgatgacgtgacggcgccgctgctggatgatgttttgcgc
ccgctttatgccgcctatcaggccaccaaacaggcgcgcaatgaacgccaaccgctcgat
cttgatctgccggaacgcaaaattgtgctgtccgatgagggtaaggttttggcggtcgat
ttttatgagcgtcttgatgcgcataaggtgatcgaggaattcatgatcctcgccaatgtt
tctgcggctgaggaattgaatcgcctgaaggcgccgcttttgttccgcgtgcatgaggag
ccgagcccagaaaagctgcaagccctgcgcgaagtggccgaggcgtcgggctttgtgctg
tccaaggggcaggttctcaagacttcgcacctgaaccagttgcttgccgcggccgaaggg
acggagttttacgagctgatcaacgtcagcaccctgcgcgctatgacccaagcctattac
agcccgcaaaactttggccatttcgggctggcgctgcgcaattatgcgcatttcacctct
ccgatccggcgctattcggacctgatcgtgcaccgcgccttgatcgccgcccatggctgg
ggcaatgacgggttggcccagcaagatgttgaggagcttgccgaaaccgccaagcatatc
tctgataccgaacgccgttcgatggtggctgaacgcgataccaatgaccgctaccttgcc
gcttatttggcggatcgggtgggggcgatattcgatggccgtgtttcaggcgtgcagcgt
ttcgggctgtttgtgaagctggatgatagcggcgcggacgggctgatcccgatccggtct
gtggggcgggagttctttcactttgatgccgatacccagaccttgatgggggctgatacc
ggtctgacaatcggtattggtcagcgtgtcaaggtgcggctggccgatgcggttcccgtc
accggcggcttgattttggagctgctggagatcgacgaccgcgccctgcccaaaagccac
gcgccgcgcggtcgcggcagcccgcgcaagcccggcaaagcggcggcaaaatcccgcgcg
gtcaaacgcaaggtttcgcgtcagcggcgcaaataa
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