Pseudorhodobacter turbinis: EOK75_20010
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Entry
EOK75_20010 CDS
T05954
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pseb
Pseudorhodobacter turbinis
Pathway
pseb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pseb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EOK75_20010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pseb03019
]
EOK75_20010
Enzymes [BR:
pseb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EOK75_20010
Messenger RNA biogenesis [BR:
pseb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EOK75_20010
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QCO57938
UniProt:
A0A4P8ELJ1
LinkDB
All DBs
Position
unnamed1:complement(1555205..1556545)
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AA seq
446 aa
AA seq
DB search
MTTFSDLGLSPKLMAGLDNAGYTTPTPIQVQAIPYIMQGRDIMGLAQTGTGKTAAFGLPL
LHRLLDIGHPPAPRTVRSLILAPTRELVSQISDNLTNYTKGTPVKVVMITGGASIFRQSE
KLARGADVVVATPGRLIDLLDRKALTLEACGYLVLDEADQMLDMGFIHALRKIAQYIPLK
RQTMLFSATMPKLIEDLAGTYLRDPVKVQVAPPGKPVERIEQSVHYTPQGDKAKLLESYL
TEHKGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRNGELDVLV
ATDVAARGIDIPGVRHVYNYDLPNVPENYVHRIGRTARAGAEGRAIAFCAPAEMGELKDI
EKMLKKPIAIIGGAPWGLADIKAAPKPPQRGARPPRGGGGQGKPRSGQGKPGAKPAGKPM
RSVEGGHGTPKKAKRVGKPQGRTTAA
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgttttctgacttggggctttcccctaagcttatggctggcttggacaatgcc
ggctacaccacccccacaccgattcaggtgcaagccattccctatatcatgcagggccgc
gacatcatggggctggcgcaaaccggcaccggcaaaacagcggccttcggcctgccttta
ctgcaccgtttgctcgacatcggccacccgcccgcgccgcgcaccgtgcgcagcctgatc
ttggccccgacacgcgagctggtttcccaaatctcggacaacctgacgaattacaccaaa
ggcaccccggtcaaggtcgtgatgatcaccggtggcgcgtccatcttccgccagtcggaa
aagctggcacgcggggccgatgttgtggttgcaacccccggccgccttatcgacctgctt
gatcgcaaggccctcacgcttgaggcttgcggctatctggtgctggatgaggccgaccag
atgcttgacatggggttcatccatgcgctgcgcaaaatcgcgcaatatattccgctcaag
cgccaaaccatgctgttttccgcgaccatgccaaaactgatcgaggatctggcaggcacc
tatctgcgcgatccggtcaaggtacaggttgcaccacccggcaaacccgttgaacggatt
gaacaatccgtccattacactccgcagggcgataaggccaaactgctggaaagctatctg
acggaacataagggcgagcaggcgctggtctttggccgcaccaagcacggctctgaaaag
ctgatgaaactgctggtgagctggggtttcaaggctggttccatccacggcaacaaatcg
caaaaccaacgtgaccgcacactgacagaattccgcaatggtgagctggacgtgctggtc
gccacagatgttgctgcgcgcgggatcgatattcccggtgtgcgccatgtctataactac
gacctgccgaatgtgccggaaaactatgttcaccgtattggccggactgcgcgggcgggt
gccgaaggccgcgccattgcgttctgcgcccccgctgaaatgggtgaattgaaagacatc
gaaaagatgctgaaaaagccgattgcaatcatcggtggcgccccttgggggcttgcggac
atcaaagccgcgcccaaaccaccacagcgcggcgcacgtccaccacgcggcggtggcggg
cagggcaaaccacgttccgggcaaggtaaacccggtgcgaaacccgcgggaaaaccaatg
cgcagcgttgaaggcggtcacggcacacccaagaaagcaaagcgcgtgggcaagccgcag
ggccgcacaaccgcagcctaa
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