Pseudomonas sp. CCOS 191: CCOS191_0603
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Entry
CCOS191_0603 CDS
T03967
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psec
Pseudomonas sp. CCOS 191
Pathway
psec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCOS191_0603 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psec03019
]
CCOS191_0603 (rnr)
03016 Transfer RNA biogenesis [BR:
psec03016
]
CCOS191_0603 (rnr)
Enzymes [BR:
psec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CCOS191_0603 (rnr)
Messenger RNA biogenesis [BR:
psec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CCOS191_0603 (rnr)
Transfer RNA biogenesis [BR:
psec03016
]
Prokaryotic type
tRNA degradation factors
CCOS191_0603 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
CRI55139
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All DBs
Position
I:650685..653258
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AA seq
857 aa
AA seq
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MADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREQLAEEFGLYEEDQIEALR
RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSEDLFLSPSQMR
LVFDGDRGLARVSGVDRRGRREGVLVEVISRAHESVVGRYFEEGGIGYVTPDNPKIQQEV
LVTAGRNGGAKIGQFVSIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDIALRSYDIPHV
WPQEVIKEARKFRSEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRMFSG
GWRLYVAIADVSSYVRLGSALDTEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRL
AMVCEMTINKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYSAVLPD
LKSLYALYKVLLAARHTRGAIDFETQETRIIFGDDRKIDEIRPTVRNDAHKLIEECMLAA
NVATAEFLQKHNVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASI
AGRPDFHLIQTVMLRSLSQAVYSVENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSVI
RSKVDTPHVKRAGAMSIPKARIYPYDENSLEQMGEQCSMTERRADEATRDVVNWLKCEYM
RDRVGETFPGVITAVTGFGLFIELTDIYVEGLVHVSALPGDYYHFDPVHHRLSGERSGRS
FRLGDTVEVKVMRVDLEQRKIDFEMSEKTVTAPVGRKPRAAAQPVAEQAPAVEAKISPKP
RSRKSEASEAYFPKDAVQRNAEVRKSREMKKALMGEARASGHAGGKSEKGGKSSGKPTKH
RKGPPKSGAPRKGKNKS
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgatcccgaggccgctcgcgaagcggaaaaatacgacaac
cctatccccagccgtgagctgatcctgcagcgcctcgccgaccgtggcgagccggctgcc
cgcgaacagctggccgaagagttcggtctttacgaagaagaccagatcgaagccctgcgc
cgccgcctgcgtgccatggagcgcgacggtcagcttatctatacccggcgcggcacctat
gccccggtggacaagctcgaccttatctgtggccgcgtgtccggccaccgcgacggtttc
ggcttcctgattcccgacgatggcagcgaagacctgttcctcagtccgtcgcagatgcgc
ctggtgttcgacggcgaccgcggcctggcccgggtttccggggtggaccgccgtggccgc
cgcgaaggtgtgctggtggaagtcatctcccgcgcccacgaaagcgtggtcggccgttac
ttcgaagagggcggcatcggctatgtgacccccgacaacccgaagatccagcaggaagtg
ctggtcaccgccgggcgcaacggcggcgccaagatcggccagttcgtgtcgatcaagatc
acccactggccaaccccgcgcttccagccccagggtgatgtggtcgaggtgatcggcaac
tacatggcgccgggcatggaaatcgacatcgccctgcgcagctatgacatcccgcatgtc
tggccgcaggaggtgatcaaggaagcgcgcaagttccgctccgaagtcgaggagaaagat
aaagagaagcgcatcgacctgcgccatctgcctttcgtcaccatcgacggcgaagacgcc
cgcgacttcgacgatgcggtgtattgcgaaccgctaggcaagctgcgcatgttctccggc
ggctggcgcctgtacgtggcgatcgccgacgtttccagctacgtgcgcctgggctcggcc
ctggataccgaagcgcagcaacggggtaactcggtgtacttccccgagcgcgtcgtgccg
atgctgcccgaagagctgtccaacggcctgtgctcgctgaacccgcacgttgatcgcctg
gccatggtctgcgaaatgaccatcaacaaggccggccagatggtcgactaccagttctac
gagggtgtgatccactcccacgcgcgcctgacctacaacaaggtcagcagcatgctcgag
cattcccgtacccgcgaaggcaaggccctgcgcgaggaatacagcgcggtgctgccggac
ctgaagagcctgtacgccctgtacaaggtgctcctggcggcccgtcacacccgcggcgcg
attgacttcgaaacccaggaaacccggatcatcttcggcgatgaccgcaagatcgacgaa
attcgtccgaccgtgcgcaacgacgcccacaagctgatcgaagagtgcatgctggcggcc
aacgtcgcgacggccgagttcctgcagaaacacaatgtgcctgcgctgtaccgcgtgcac
gacggcccgccgcccgagcgcctggagaagttgcgcgcattcctcggtgagttgggcctg
agcctgcacaaaggcaaggacccttcgccgaaggattaccaggcactgctggcgagcatc
gccgggcgcccggacttccacctgatccagaccgtcatgctgcgctcgctgagccaggcg
gtgtacagcgtcgagaacaacggccacttcggcctgaactacgaggcctacacccacttc
acctcgccgatccgtcgttacccggacctgctggtgcaccgcgccatccgtagcgtgatc
cgctccaaggtcgacaccccgcacgtcaagcgtgccggtgccatgagtattcccaaggcg
cgcatctacccgtacgacgagaacagcctcgagcagatgggcgagcagtgctcgatgacc
gagcgccgcgccgacgaagctacccgcgacgtggtcaactggctcaagtgcgagtacatg
cgtgatcgcgtcggcgagaccttccctggcgtgatcaccgcagtgaccggctttggcctg
ttcatcgagctgaccgacatctatgtcgaaggcctggtgcatgtcagcgccctgccgggt
gactactaccacttcgatcctgtgcatcaccgcctgtccggtgagcgcagcggccgcagc
ttccgcctgggcgacacggtcgaggtgaaggtcatgcgtgtcgacctcgaacagcgcaag
atcgacttcgaaatgtcggagaagaccgtcaccgcaccggtcggccgcaagccacgcgct
gccgcgcagccggtggccgagcaggcgcctgccgtcgaagcgaagatttcgcccaagccg
cgcagccgcaagagcgaggcctccgaggcgtacttcccgaaagacgccgtgcagcgcaat
gccgaggtgcgcaagagccgtgaaatgaagaaggcgctgatgggtgaggcgcgcgccagc
ggccatgccggcggcaagtcggaaaaaggtggcaagtcgtccggcaagccgaccaagcat
cgcaaggggccgcccaagtccggcgcgccacgcaagggcaagaacaagtcatga
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