Pseudomonas sp. CCOS 191: CCOS191_1301
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Entry
CCOS191_1301 CDS
T03967
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psec
Pseudomonas sp. CCOS 191
Brite
KEGG Orthology (KO) [BR:
psec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psec03009
]
CCOS191_1301 (rlmD)
Enzymes [BR:
psec01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CCOS191_1301 (rlmD)
Ribosome biogenesis [BR:
psec03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CCOS191_1301 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
TRAM
Methyltransf_31
Cons_hypoth95
MTS
Methyltransf_11
TRM5-TYW2_MTfase
Methyltransf_23
Methyltr_RsmB-F
RrnaAD
Methyltransf_15
TPMT
PCMT
Methyltransf_4
DREV
PrmA
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
CRI55837
UniProt:
A0A0F7Y4M5
LinkDB
All DBs
Position
I:1450522..1451880
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AA seq
452 aa
AA seq
DB search
MSRKKSNTGLRFQPAGGNRAAQVPVGKKQRLLIERVAGDGRGIAFSEGRTWFVSGALGGE
DVEARVLAARGKVVEARLERVFQASAERREAPCRHYARCGGCNLQHLPHDGQLALKQRLL
AEQLQRVAGVQPEEWAVPLCGPEFGYRRRARVAVRWDTKTHQLEVGFRAEASQDIVAVDD
CAVLVQPLQAIMRHLPTVLRSLSKPQALGHVELFSGTAEAVLVRHVAPLPSEDLARLEAF
CREAGAQLWLQGEGEPAPVQATAQLGFALEPWGLELAWRPGDFVQVNAQVNTLMIQQALA
WLAPQAHERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVSRAEANAHANNVHNARFFQ
ADLSQPLAGAGWAAEGFSAVLLDPPRDGAFEVVQGIARLGAKRLVYVSCNPATLARDAQV
LVGQGYRLKRAGILDMFPQTAHVEAMALFEAG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaagaaaagcaacaccggcctgcgcttccagccggccggcggcaaccgtgcc
gcacaagtgccggtgggcaagaagcagcgcctgctgatcgagcgcgtggccggtgacggc
cgtggcatcgccttcagcgagggccgtacctggttcgtcagcggcgcgctgggcggcgaa
gacgtcgaggcgcgggtgcttgccgcacgcggcaaagtggtcgaggcgcgcctggagcgg
gtgttccaggccagcgccgagcgccgcgaagcgccctgccgtcactacgcccgctgtggc
ggctgcaacctccagcacctgccccatgacggccagctggcgctcaagcagcgcctgctc
gccgagcagttgcagcgggtggccggcgtgcagcccgaagagtgggctgttcccttgtgc
ggaccggaattcggctaccgccgccgggcgcgggtagcggtacgctgggacaccaagacg
catcagctggaggtcggtttccgcgccgaggccagccaggacatcgttgccgtcgacgac
tgcgcggtgctggtacagcccttgcaggcgatcatgcgccacctgccgaccgtgttgcgc
agcttgagcaagccgcaggcgctggggcatgtggaactgttcagcggtaccgccgaggcg
gtgttggtgcggcatgtggcgccattgccaagtgaagacctggcgcggctcgaggcattc
tgccgcgaggccggcgcccagttgtggctgcaaggcgagggcgagccggcaccggtgcag
gccacggcgcaactgggctttgccctggagccctggggcttggagctggcctggcgaccg
ggcgacttcgttcaggtcaatgcccaggtcaataccttgatgatccagcaggctttggcc
tggctggcgccccaggcgcatgagcgggtcctggacctgttctgcggcctgggcaacttt
gccttgcccctggcgcgccaggcccgcgaggtggtggcggtggaaggcgtgcaggcgatg
gtcagccgtgccgaggccaatgcccacgccaacaatgtgcataacgcacggttttttcag
gccgatttatcgcagcctttggcgggcgccggatgggctgccgagggcttttctgcggta
ctcttggatccaccgcgcgacggggctttcgaggtggtgcagggcatcgcccggctgggt
gcgaaacggctggtctacgtatcgtgcaacccggccacgctggcgcgtgacgcgcaagtg
ctggtcgggcaggggtaccggttaaaaagggccgggattctcgacatgtttcctcagacg
gcgcatgtcgaggccatggcgttattcgaagcgggctag
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