Pseudomonas sp. CCOS 191: CCOS191_3774
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Entry
CCOS191_3774 CDS
T03967
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psec
Pseudomonas sp. CCOS 191
Pathway
psec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCOS191_3774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psec03019
]
CCOS191_3774
03009 Ribosome biogenesis [BR:
psec03009
]
CCOS191_3774
Enzymes [BR:
psec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CCOS191_3774
Messenger RNA biogenesis [BR:
psec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CCOS191_3774
Ribosome biogenesis [BR:
psec03009
]
Prokaryotic type
rRNA processing factors
CCOS191_3774
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CRI58310
LinkDB
All DBs
Position
I:4289898..4293113
Genome browser
AA seq
1071 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRTAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPDVLNNQSSYEIASAETEEAPLPTATRTLVRQEAAVKTAPARANAPVPAAV
EEQPAAPVTAAPSVPEPSLFKGLVKSLVSLFAGKEEPAAAPAVTTEKPATERSPRNEERR
NGRQQSRNRNGRREEDRKPREERSERAPREERQPREERAPREERAPREERQRQPREDRRG
NREERVRELREPLDAAPAPAAREERAPREERAPREERVAREERAPREERAPREERAPREE
RAPREERAPREERAPREERAPREERAPREERAPREERAPREERQLRPEAQAVEQAAELAE
EQLPNDELLQDEQEGADGERPRRRSRGQRRRSNRRERQRNANGELIEGDEDAGEEQQPQQ
HQATELGAELAAGTAVIAAVATSNISADAEAQANQQAERASAAVAETQVEITEVVAEQVA
IAPVVEQPVSEPVVAVEPSIEPVVEVAPQPVVEEAPAEQPAVVAEAVQAPAVEAGEIEQP
QVVEATVVEAPVAEQPVAVVEPVVEAQPEVAEAPAAEPAPIVAEQAPEEAPAPVEAPSAM
LANGRAPNDPREVRRRKREAEAAAAAAAQAAAEAAPAQALETADEHKPHHG
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgtagccctggtggac
ggccaacgcctctacgacctggacatcgagtccggtgcccgtgagcagaaaaaggccaac
atctacaaaggcaagatcacccggatcgagcccagccttgaagccgccttcgtcgacttc
ggctccgaacgtcacggcttcctgccgctgaaggaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgggtcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtc
caggtcgagaaggaagagcgcggcaacaaaggcgccgccctgaccaccttcatcagcctg
gccggccgctacctggtgctgatgccaaacaacccgcgcgccggcggcatctcccgccgc
atcgaaggcgaagagcgcaacgagctgcgtgaagcactgaacggcctgaccgttccgggc
gacatgggcctgatcgtgcgtaccgctggccttggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcagctgtggaccgccatcaaggaagcctcgctggaccgtacc
gcgccgttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgacgcccaggaagaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgtg
ccgctgttcaaccgcttccagatcgaaagccagatcgagaccgccttccagcgcgttgtc
gacctgccgtccggcggctcgatcgtgatcgacccgaccgaagcgctggtttccatcgac
atcaactcggcgcgcgccaccaagggcagcgacatcgaggaaaccgccctgcagaccaac
ctggaagcggccgaagagatcgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgccgtcgaagaacgcgtg
cgcgaatgcctcgaggccgaccgcgcccgtgtgcaggtcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgccagcgcctgcgcccatcgctgggcgagagcagcggcatcgtc
tgcccgcgctgctcgggtaccggcatcatccgtgacgtcgagtcgctgtcgctggcaatc
ctgcgcctgatcgaggaagaagccctgaaggaccgcaccgccgaggtgcgcgcccaggtg
ccgatcccggtggccgccttcctgctcaacgagaaacgcaactcgatcaccaagatcgaa
ctgcgcactcgcgcgcgcatcatcatcctgccgaacgatcacctggaaaccccgcacttc
gaagttcagcgcctgcgcgacgacaacccggacgtgctgaacaaccagtccagctacgaa
atcgcctcggccgagaccgaagaagccccgctgccgaccgccacccgcaccctggtacgc
caggaagctgcggtgaagaccgcaccagcccgcgccaacgcaccggtaccggccgccgtc
gaagagcagccagccgcacccgtgacagcggcgcctagcgtaccggagccaagcctgttc
aagggcctggtcaagtcgctggtcagcctgttcgccggcaaggaagaacctgccgccgca
ccggccgtcaccaccgaaaaaccggccaccgagcgttcgccacgcaacgaagagcgccgc
aacggtcgccagcagagccgcaaccgcaatggccgccgcgaggaagaccgcaagccgcgt
gaagaacgcagcgagcgcgccccgcgtgaagagcgccagccacgcgaagagcgtgcaccg
cgtgaagaacgcgccccacgcgaagagcgtcagcgccagccgcgcgaagaccgccgtggc
aaccgtgaagagcgcgtgcgcgaactgcgtgagcccctggatgccgcaccggccccggcc
gcccgcgaagaacgcgccccgcgtgaagagcgtgcaccacgtgaggaacgtgtagcccgt
gaagagcgcgcaccacgtgaagaacgtgcccctcgcgaagagcgcgcgccacgtgaagaa
cgcgcaccgcgtgaagaacgtgcaccgcgtgaagaacgcgcaccacgtgaagagcgtgca
ccgcgtgaagaacgcgcccctcgtgaagagcgtgcgccacgtgaagaacgcgctccgcgt
gaagagcgccagctgcgccctgaggcgcaggccgtcgaacaggccgccgagctcgccgaa
gagcaactgccgaacgacgaactgctgcaggacgagcaggaaggcgccgatggcgagcgt
ccgcgccgccgctcccgtggccagcgtcgtcgcagcaaccgtcgtgagcgccagcgcaat
gccaatggcgagctgatcgaaggcgacgaagacgccggcgaagagcagcagccacaacag
caccaggccaccgagctgggtgctgaactggccgccggcactgccgtcatcgccgccgtt
gccaccagcaacatcagcgccgatgccgaagcccaagccaaccagcaggccgagcgcgcc
agcgccgctgtcgccgaaacccaggtggaaatcaccgaggtcgtggccgagcaggtcgcc
atcgccccggtggtcgagcaaccggtcagcgagccagtggtcgccgtcgagccgagcatc
gaaccggtggtcgaagtagcgccgcagccagtggtcgaagaagcccctgccgagcagcct
gccgtcgtcgccgaggcggtgcaagcccctgccgtggaagccggtgaaatcgagcagccg
caggtagtcgaagccaccgtggtcgaagccccggtagccgagcagcctgtagcggtcgtc
gagccagtggtcgaggcccagccggaagtggctgaagcacctgccgccgagcctgcgccg
atcgttgccgagcaggcgcccgaggaagcaccggccccggtcgaagcgccttcggcgatg
ctggccaacggccgcgccccgaacgacccacgtgaagtgcgtcgccgcaagcgcgaagcc
gaagctgcagccgccgctgccgcccaggccgctgccgaagccgcccctgcgcaagcgctg
gaaaccgccgatgagcacaagcctcatcacggttga
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