Pseudomonas sp. CCOS 191: CCOS191_3926
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Entry
CCOS191_3926 CDS
T03967
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psec
Pseudomonas sp. CCOS 191
Brite
KEGG Orthology (KO) [BR:
psec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psec03019
]
CCOS191_3926 (hrpA)
Enzymes [BR:
psec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CCOS191_3926 (hrpA)
Messenger RNA biogenesis [BR:
psec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CCOS191_3926 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
AAA_25
T2SSE
nSTAND_NTPase5
ResIII
ABC_tran
NACHT
AAA_30
SRP54
AAA_23
Motif
Other DBs
NCBI-ProteinID:
CRI58462
LinkDB
All DBs
Position
I:complement(4461161..4465066)
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDQLLNNLDHAMIADRHRLRRQLHELRKRPDEGKLAQWVEKVQASCAQVTARQQS
VPSIRYDDNLPIAAKRDEIKKALAEHQVLVIAGETGSGKTTQLPKICLELGRGSRGLIAH
TQPRRIAARSVAARVAEELGTPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPELKLIITSATIDLERFSKHFDGAPII
EVSGRTYPVETWYRPLTSEQDEEGNQVEEDLSVDQAILASLDEIAQHERSQGKGPGDVLV
FLPGEREIRDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQSHSGRRVVLATNVAETSL
TVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSED
DFNGRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPLGRQLARLPIDPRMGRMLLEGARQGSLQEVLIVASALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKNFLNYLRLREWRDAHRQ
LALICRDLQLTMNKDACDYQRMHKAILSGLLSQIGQKTEEGDYQGARQRRFWIHPSSGIG
RKRPQWVMAAELVETTKLYARMVAKIEPDWIEPLATHLIKKNHFEPHWEKKRGQVVAYEQ
ITLYGLILVGRRPVHFGPIDPVTSRELFIRDGLVGGEIQSRAKCLAANKRLLEQLDELEA
KARRRDILADEETLYAFYEARLPAEIHQTATFDAWYRMTSQKDANLLIMREEDVLAREAS
EVTAAQYPDHLQVGELRLSLSYHFEPNHPRDGVTVRVPAPLLPNLPGERLEWLVPGLLEA
KCIALVRNLPKALRKNFVPVPDFVKAALSRMVFGQGALPQALGHELLRMTGARVSDEAWA
EATGLVEGHLRMNIEVVDAQGKFLGEGRDLAELTARFAAASQAALALPRNDKAEQPVQAK
VFEQVAQTAQQKIAGLSMTVYPALVEDNGTVREGRFSTQAEAEFQHRRALQRLLLQQLAE
PAKFLRGKLPGLTELGLLYRELGRVEALVEDILLASLDSCVLEGEDPLPRDGAALASLAE
RKRGNWSEHAERLARLTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLANLVYPGFVR
ETPGAWFKELPRYLKAVELRLEKLGSQVQKDRVWSGELANCWAQYQARADKHAQEGKRDE
QLTLYRWLLEEYRVSLFAQQLGTKVPVSDKRLSKQWSQVEA
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgacagaccacgccatcgaccaactgctgaacaacctcgaccacgccatgatcgccgac
cgccatcggctgcgtcggcaattgcacgaattgcgcaagcgccccgacgagggcaagctc
gcgcagtgggtggaaaaggtccaggcgtcctgcgcccaggtcaccgcgcgccagcagagc
gtgccgagcattcgctacgacgacaacctgcccatcgccgccaagcgcgacgagatcaag
aaggccctggccgagcaccaggtgctggtgatcgctggcgagacaggttcgggcaagacc
acccagttgccgaagatctgcctggagctgggccgtggcagccgcggtctgatcgcccac
acccagcctcggcggatcgccgcgcgcagcgtggcggcgcgggtcgccgaggagctgggc
acgccgttgggggcgctggtgggctaccaggtgcgcttcgaggaccagagcgattcgaac
accctggtcaagctgatgaccgacggtatcctgctggctgagacccagcacgaccgcttc
ctcgaacgctacgacacgatcatcgtcgacgaggctcacgagcgcagcctgaacatcgac
ttcctgctcggctacctcaagaccctgctgcatcgccgtccggaactgaagctgatcatc
acctcggcgaccatcgatctggagcgtttctccaagcacttcgacggcgcgccgatcatc
gaggtgtccggccgtacctacccggtggaaacctggtaccgcccgctgaccagcgagcag
gacgaggagggcaaccaggtcgaggaagacctctcggtcgaccaggcgatcctcgccagc
ctagacgagatcgcccagcacgagcgcagccagggcaagggcccgggcgacgtgctggtg
ttcctgcccggcgagcgcgagatccgcgacgccgccgagatcctgcgcaaggcgcagttg
cgccacaccgagatcctgccgctgtatgcgcggttgtcgccggccgagcaacagcggatc
ttccagtcccacagcggccggcgcgtggtgctggcgaccaacgtcgccgagacttcgctg
acggtgccgggcatccgctacgtgatcgacagcggcaccgcccgcatcagccgctacagc
taccgcgccaaggttcagcgcctgcccatcgaagccgtttcgcaggccagcgccaaccag
cgtaaaggccgctgcggccgggtcgagccgggtatctgcatccgcctgtacagcgaggat
gacttcaacggccggccggcgttcaccgatccggagatcctgcgcaccaacctggcggcg
gtgatcctgcagatgctgcacctgcgcctgggcgcgatcgacgccttcccgttcatcgag
ccgccggatggcaaggccatcagtgacggcttcaacctgttgcaggagctgtcggcggtc
aaccgcgagaaccagctgacaccgctgggccgccaattggcgcgtctgccgatcgatcct
cgtatgggccgcatgctgctcgaaggtgcccgccagggcagcctgcaggaagtgctgatc
gtcgccagcgcattgtcggtgcaggacccgcgcgagcgcccaccggagcgccagcaggcc
gccgaccaggcccatgcccagtggaaggatgtcgattccgacttcgccgcgctggtcaat
ctatggcgcggtttcgaggagcagcgccaggcgctgaccgccaacccgctgcgcaactgg
tgccgcaagaacttcctcaactacttgcgcttgcgcgagtggcgcgacgcccaccgccag
ctggcgctgatctgtcgcgacctgcaactgacgatgaacaaggatgcctgcgactatcag
cgcatgcacaaggcgattctcagcggcctgctcagccagatcggccagaagaccgaggag
ggcgactatcagggtgcgcgtcagcggcggttctggattcacccgtcgtcgggcattggc
cgcaagcggccgcaatgggtgatggctgccgaactggtggaaaccaccaagctgtatgcg
cgcatggtggccaagatcgagccggactggatcgagccgctggccacccacctgatcaag
aagaaccacttcgaaccgcactgggagaagaagcgcggccaggtggtggcctacgagcag
atcaccttgtacgggttgatcctggtcggacgccgcccggtgcatttcggcccgatcgac
cccgtcacttcccgcgagctgttcatccgcgatggcctggtcggcggcgagattcagtcc
cgggccaagtgcctggcggccaacaagcgcctgctggagcagctcgacgaactggaggcc
aaggcccgtcgacgcgacattctcgccgacgaagagacgctgtacgccttctacgaagcg
cgcctgcccgcagagatccaccagaccgcgaccttcgatgcctggtaccggatgaccagc
cagaaggacgccaacctgctgatcatgcgcgaggaggacgtactggcccgcgaggccagc
gaggtcaccgcagcgcagtacccggatcacttgcaggtgggcgaactgcgcctgtcgctg
agctaccacttcgaaccgaaccatccacgtgacggcgtgaccgtgcgggtgccggcgccg
ttgctgcccaacctgccgggcgaacgcctggaatggctggtgccgggcctgctcgaggcc
aagtgcatcgccctggtgcgcaacctgcccaaggccctgcgcaagaacttcgtgccggtg
ccggacttcgtcaaggcggcactgtcgcgcatggtcttcggccagggcgcgttgccccag
gcacttggccatgagctgctgcgcatgaccggggcgcgggtgtccgacgaggcctgggcg
gaagcgaccgggctggtggaaggccatctgcgcatgaacatcgaagtggtcgatgcccag
ggcaagttcctcggcgagggccgcgacctggccgaactgactgcccgttttgccgccgcc
agccaggccgccctggccttgccgcgcaacgacaaggccgagcagccggtgcaggccaag
gtattcgagcaagtggcgcagaccgcccagcagaagatcgccgggctgtcgatgaccgtg
tacccggcactggtcgaggacaacggcacggtgcgcgaggggcggttctcgacccaggct
gaggccgagttccagcaccgacgtgccctgcagcgcctgctgctgcaacagctggccgag
ccggccaagttcctgcgcggcaagctgccggggctgaccgaattgggcttgctgtatcgc
gaattgggccgggtcgaggcactggtggaggatatcctgttggccagtctcgacagttgc
gtgctcgaaggcgaagacccgctgccccgtgatggcgcggccctggcctcgctggccgaa
cgcaagcgcggcaattggagcgagcatgccgagcgcctggcgcgcctgaccttggaggtg
ctcaagctgtggcatggcttgcagaagcgcttcaagggcaagatcgacctgagccaggcg
gtggcactcaacgatatcaagcagcaactggccaacctggtgtatccgggcttcgtgcgc
gagacgccgggggcctggttcaaggaattgccgcggtatctcaaggcagtggaactgcgc
ctggagaagctggggtcgcaggtgcagaaggaccgggtgtggagtggcgagctggccaat
tgctgggcgcaataccaggcccgtgccgacaagcatgcccaggaaggcaagcgcgatgag
caactgaccttgtaccgctggctgctggaggagtaccgggtgtcgttgtttgcccagcag
ttggggaccaaggtgccggtttccgacaagcgactgagcaagcagtggagtcaggtggaa
gcctaa
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