Pseudomonas sp. CCOS 191: CCOS191_4688
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Entry
CCOS191_4688 CDS
T03967
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
psec
Pseudomonas sp. CCOS 191
Pathway
psec03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CCOS191_4688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psec03400
]
CCOS191_4688
Enzymes [BR:
psec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CCOS191_4688
DNA repair and recombination proteins [BR:
psec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CCOS191_4688
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
CRI59224
LinkDB
All DBs
Position
I:complement(5287958..5291629)
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AA seq
1223 aa
AA seq
DB search
MTQARPLALSFPLHGSQLIEASAGTGKTFTISALYLRLILGHGGEQGFARELLPPQILVV
TFTDAATKELRERIRARLAEAARFFRGELEDADPLLHLLREDYPQAHWPRCANRLEIAVQ
WMDEAAVSTIHGWCQRMLREHAFDSGSLFTQSLETDHSELLGQVMRDYWRRFCYGMRGES
LAWVRGNWGSPDALLPRIRPLFGRVRGQVDDQEPQALIEATLRQRTEQLAQLKAPWAAWA
DELQQICRDAVAAKQADGRKLQARYFEPWFDKLRAWAGDEQAMELDLGTGFTRLTPAGMA
EAWKAGEPPQHPALHAMAALREQLQGLASPDARLLEHAAAWVSARFEVEKRRRAEMGFDD
MLLRLEHALGSDAGERLAALIREQFPVALIDEFQDTDPVQYGIFERIYRISENNPDTGLF
MIGDPKQAIYAFRGADIFTYLAARRATAGRLHSLDTNYRSSQAMVAAVNRVFLQAEERAE
GRGAFLFRAHGDNPLPFVEVRAKGRGEQLLVAGQPSAALCCWQLDSDEPVSSTLYRQQLA
ASCASHIVELLNGGQQGISGFADAAGKLRPCLPSDIAILVRDGREAQLIRAELAARDVRS
VYLSDKDSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLDLPLVELERLNQDERVW
EGWVMRFRRYRDIWQRQGVLPMLRRLLHDFQLPRALMGRSDGERVLTNLLHLAELLQQAA
GELDGEQALIRHLTEHLANAGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVYLPFIC
TSKPVDGQRLPLGWHDDQGVAHLTLTPNAEQIERADDERLAEDLRLLYVALTRAQYACWL
GVADLKRGTQRSSQLHRSALGYLLGGGLSLPASSQLGEWLQALAASNPAISREALPEVQA
QSYRTPDSQRELLPPRKPRRAAAEHWWIASYSALRVGDQTLIADSSQAQQLLDDEVLDSQ
LLREVPAEAGDIHRFPRGPNPGTFLHGLLEWAGREGFAEISSQAEVIERTVGRRCNRRDW
TGWIPTLTQWLQQLLLQPMPLQGATPTLAQLNHYQIEMEFWFASHQVDALRLDYQVARHT
HGGAARPAAQPTLLNGMFKGFIDLAFELDGRYYVADYKSNWLGPDAEAYGDLAMEQAILE
HRYDLQYVLYLLALHRQLRARLPDYDYDRHVGGAVFIFLRGVTSAGHGLYHARPPRALIE
QLDAMFRGEQEPEQQDLFAGAAP
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagcccgccccctagcgctgagctttcctttgcacggcagccaactgatcgag
gccagcgccggcaccggcaagaccttcaccatctcggccctgtacctgcgcctgatcctc
gggcatggcggcgagcagggctttgcccgcgagctgctgccgccgcagatcctggtggtg
accttcaccgatgcggcaaccaaggaactgcgtgagcgtatccgtgcgcgcctggctgaa
gcggcgcgctttttccgcggcgaactcgaggatgccgatcccttgctgcacctgttgcgc
gaggattatccacaggcgcactggccacgctgtgccaaccgcctggaaatcgccgtgcag
tggatggacgaagcggcggtgtcgaccatccacggctggtgccagcgcatgttgcgcgag
catgcgttcgacagtggcagcctgttcacccagagcctggaaaccgatcacagcgagttg
ctgggccaggtcatgcgcgactactggcggcgcttctgctacggcatgcgtggcgagtcg
ctggcctgggtgcgcggcaactggggcagccccgatgccttgttgccaaggatcaggcca
ttgttcggccgagtgcgtggccaggtggacgatcaggagccgcaagccttgatcgaggcg
accctgcgccagcgcaccgagcagctggcccagctcaaggccccttgggccgcctgggcc
gatgagctgcagcagatctgccgcgatgccgtggccgccaagcaggcggacgggcgcaag
ttgcaggcacgctacttcgagccctggttcgacaagctgcgcgcctgggccggtgatgag
caggccatggagctggacctgggtaccggctttacccggctgaccccggccggcatggcc
gaggcgtggaaggccggcgagccaccgcagcacccggcgctgcacgccatggcggccctg
cgtgaacagttgcaggggctggccagtcccgatgcgcgcctgctggagcatgccgccgct
tgggtttcggcgcgcttcgaggtggagaagcgtcgacgcgctgaaatgggcttcgacgac
atgcttttgcgccttgagcatgccctgggcagcgatgccggcgagcgcctggccgcgttg
atccgcgagcagttcccggtcgcgttgatcgacgagttccaggacaccgaccccgtccag
tacggcatcttcgaacgtatctaccgtatcagcgagaacaacccggacaccggcctgttc
atgatcggcgaccccaagcaggcgatctatgccttccgtggcgccgacatcttcacctac
ctggccgcacgccgcgccaccgccgggcgcctgcacagcctggacaccaactaccgctcc
agccaggccatggtcgcggcggtgaaccgggtattcctccaggccgaggagcgtgccgag
ggccgtggggcattcctgtttcgggcccatggcgataacccgctgcccttcgtcgaggta
cgcgccaagggccgtggcgagcaattgctggtggccggtcagccgagcgcggccctttgt
tgctggcagctggatagcgatgagccggtatccagtaccttgtatcgccagcagctggcg
gccagttgcgcgagccatatcgtcgagctgctcaatggcgggcagcaaggcatcagtggt
ttcgccgacgccgctggcaagttgcgcccctgcctgccctccgatatcgccatcctggtg
cgcgacggccgcgaggcccagctgatccgcgccgagctggccgcccgcgatgtgcgcagc
gtgtacctgtcggacaaggactcggtgtttgccgcccaggaggcccacgacctgctggcc
tggctcaaggcctgcgccgaaccggactcggagcgcctgctcaaggccgccctggccagc
ctgaccctcgacctgccgctggtcgaactggagcgcctgaaccaggacgaacgggtctgg
gagggctgggtgatgcgttttcgccgctaccgcgacatctggcaacgccagggcgtgctg
ccgatgctgcgccgcctgctgcatgacttccaactgccccgcgcgttgatgggccgcagt
gacggcgaacgcgtgctgaccaacctgctgcacctggccgagctgttgcagcaggcggcg
ggcgaactggatggcgagcaagcgctgatccgccacctcaccgagcacctggccaacgcc
gggcaggcgggcgaggagcagatcctgcgcctggaaagcgacgagcaactggtcaaggtg
gtgaccatccacaagtccaagggcctggaatacccactggtgtacctgccgttcatctgc
accagcaaaccggtggatggccagcgcctgcccttgggctggcacgatgatcaaggcgtg
gcgcacctgaccctgacaccgaatgccgagcagatcgagcgcgccgacgacgagcgcctg
gccgaggacctgcgcctgctctacgtcgccctgacccgtgcccaatacgcctgctggctg
ggcgtcgccgacctcaagcgcggcacccagcgcagctcgcaactgcaccgttcggcactg
ggttacctgctcggcggcgggctgtcgttgcccgcctccagccagctgggcgagtggctc
caggcactggcagcgagcaacccggccatcagccgggaggcgctgcccgaagtgcaggca
cagagctatcgcacgccggacagccagcgcgaactcctgccgccgcgcaagccacggcgt
gccgccgcggaacactggtggattgcctcctacagtgccctgcgggtgggcgaccagacg
ctgatcgccgacagctcccaggcccagcaactgctggacgacgaggtgctggacagccag
ctgctgcgcgaggtcccggccgaggcgggcgatatccaccgcttcccccgtgggccgaac
ccggggaccttcctccatggcctgctcgaatgggcggggcgcgaaggtttcgccgagatc
agcagccaggccgaggtgatcgagcgcaccgtggggcggcgctgcaatcgacgcgactgg
accggctggatccccacgctgacgcagtggctgcagcaattgctgctgcaacccatgccg
ctgcagggggccacccctaccctggcgcaactgaaccattaccagatcgaaatggagttc
tggttcgccagccaccaggtcgatgccctgcgcctcgactaccaggtggcgcgccatacc
catggcggcgcggcgcgcccggccgcgcagccgaccttgctcaatggcatgttcaagggc
ttcatcgacctggcgttcgagctcgatgggcgttactacgtggccgactacaagtccaac
tggcttggccccgacgccgaggcctatggcgacctggcgatggagcaggcgatcctcgaa
caccgctacgacctgcagtacgtgctctacctgctggctctgcatcgccagttgcgcgcc
cgcctgcctgactacgattacgatcggcatgtcggtggcgccgtgttcatcttcctgcgc
ggcgtcacgtcggcaggtcacgggctgtatcatgcgcgcccaccccgggcgctgatcgaa
cagctcgacgcgatgttccggggtgagcaagaacctgaacaacaggacctgtttgccgga
gccgcgccatga
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