Pseudomonas sp. CCOS 191: CCOS191_4724
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Entry
CCOS191_4724 CDS
T03967
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
psec
Pseudomonas sp. CCOS 191
Brite
KEGG Orthology (KO) [BR:
psec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psec03019
]
CCOS191_4724 (hrpB)
Enzymes [BR:
psec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CCOS191_4724 (hrpB)
Messenger RNA biogenesis [BR:
psec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CCOS191_4724 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
Cas3-like_C_2
AAA_30
Flavi_DEAD
DUF7744
Motif
Other DBs
NCBI-ProteinID:
CRI59260
UniProt:
A0A0F7Y4S0
LinkDB
All DBs
Position
I:complement(5342757..5345285)
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AA seq
842 aa
AA seq
DB search
MISLPIDAVLSDLRQALAERDEAVLEAPPGAGKTTRAPLALLDQPWLAGQTILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQGDPALEGVGL
VIFDEFHERSLDADLALALSLNGRALLRDEPPLKILLMSATLEGERLSRLLDDAPIISSQ
GRMHPVDIRWGRPFQPGEFVEPRVVDCVLQALADESGSLLVFLPGQAEIRRVHQALQEAV
GERPQILLCPLHGELELSAQRAAIEPAPKGQRKVVLATNIAETSLTIDGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAHGSAEILQ
ADLAGLALQLARWGVPPEQLGWLDQPPAAAYGQAQDLLARLGAFKPGCRDNLSAHGQAMA
ELPAHPRIAHLLLRAQDLGLADLACDVAALLGERDILRGGGADLHSRLALLSGESRGARG
GQVGVQRARQLARQYRGQLRGKPRSPVADPDHPRWLGAVLALAYPDRVAQQRREGGGEYR
LANGRAALFAEADVLMKSPWLVIADLGSRQGQREERIYLAAEFDPALFDGVLAEQVEQLD
LLDWDEREQVLRAERQRKVGELVLSREPLPGLDDEARAKALLGLVRRKGLNLLTWTPELR
QWQARVALLRQLDLEKDGHSEWPDLGDDALLASLEDWLQPYLGKVSRLSHFANLDLSSIL
RNLLPWPLPQRLDELAPSHLAVPSGSSIRLDYSEQPPILAVRLQELFGLADTPRIANGRQ
QVKLHLLSPARRPVQVTQDLANFWRTTYAEVKKDLKGRYPKHYWPDDPLVAEATARAKPR
KA
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgatttcattaccgatcgatgccgtactgtccgacctgcgccaggccctggccgaacgt
gacgaagcggtgctcgaggcgccacccggcgccggcaagaccacccgcgcaccgctggcg
ctgctcgaccagccctggctggccgggcagaccatcctcatgctcgagcccaggcgcctg
gccgcccgcgccgccgccgaacgcctggccagcgagctgggcgagaaagtcggcgaaacc
gtgggttatcgcatccgtctcgacagcaaggtcggcccgaacacgcgcatcgaagtggtc
accgaaggcattctcacccgccgcctgcaaggcgatcctgcgcttgaaggcgtgggcctg
gtgatcttcgacgagttccacgagcgcagcctggatgccgacctggccctggccctgagc
ctcaacggtcgggcgctgctgcgtgatgagccgccgctgaagattctgctcatgtcggcg
accttggagggtgagcgcctgtcgcgcctgctcgacgatgcaccgatcatcagcagtcag
ggacgcatgcacccggtggatatccgctggggccggccgttccagcctggcgagttcgtc
gaaccgcgcgtggtcgactgcgtgctccaggccctggccgacgagtccggcagtctgttg
gtgttcctccccgggcaggccgaaatccgccgcgtgcaccaggctctgcaggaggccgtg
ggcgagcgtccgcagatcctgctctgcccgctgcacggcgagctagagctgagtgcccag
cgcgccgccatcgagccggcgcccaagggccagcgcaaggtggtgctggccaccaacatt
gccgaaaccagcctgaccatcgacggtgtgcgcgtggtgatcgacgcggggcttgcgcgg
gtgccacgcttcgaccccggcagcggcatgacccgcctggacacccagcgcatctcccgg
gccagcgccacccagcgcgccggtcgtgccgggcgcctcgagcctggcgtgtgctatcgg
ctgtggtccgaggcgcagcatgaccagttggcggcccacggcagtgccgagatcctccag
gccgatctggccggactggccttgcagctggcgcgttggggagtgccgccggagcagctc
ggctggctcgaccagccacctgccgcagcctatggtcaagcccaggacctgttggcgcgg
ctcggcgccttcaagccaggttgccgcgacaatctgagtgcccatggccaggccatggcc
gagctgcctgcgcatccacgcatcgcccatttgctgctgcgcgctcaggatctcgggttg
gccgacctggcgtgcgatgtcgcagcgttgctgggcgagcgcgacatcctgcgcggcggc
ggtgctgatctgcacagccggctggctttgctcagcggtgaaagccggggcgcgcgaggt
gggcaggtcggtgtgcagcgtgcgcggcagctggcccggcaataccgtggccagctgcgt
ggcaaaccgcgcagcccggtcgccgatcccgatcatccacgctggctgggcgcggtgctg
gcgctggcctaccccgatcgggtggcgcaacaacgtcgcgaaggtggcggtgaataccgc
ctggccaatggccgggcggcgctgttcgccgaagccgatgtgctgatgaaaagtccgtgg
ctggtgattgccgacctgggcagccggcaggggcagcgcgaggaacgcatctacctggct
gcagagttcgacccggctttgttcgacggagtgctggccgagcaggtcgagcaactcgac
ctgcttgactgggacgaacgcgaacaggtgttgcgcgccgagcgccagcgcaaggtcggc
gagctggtgctcagccgtgaaccgttgcctgggctggacgacgaggcgcgggccaaggcg
ttgctcggcctggttcggcgcaaaggcctgaacctgctgacctggaccccggagctgcgc
cagtggcaggcccgcgtcgcgctgctgcgtcagctggatctggaaaaggacggccacagc
gagtggcccgacctgggcgacgacgccttgctggccagcctggaagactggctgcaaccc
tacctgggcaaggtgtcgcggctgagccatttcgccaacctggatctgtcctcgatcctg
cgcaacctgctgccctggccgctgccccagcgcctggacgagctcgcaccgtcgcacctg
gccgtgccttcgggctcaagcatccgcctggactacagcgagcaaccaccgatcctggcc
gtgcgcctgcaggagctgttcggcctggccgatactccgcgcatcgccaatgggcggcag
caggtcaagctgcacctgctgtcgccagcacgtcggcccgtgcaagtgacccaggacctg
gccaacttctggcgcaccacctacgccgaggtgaagaaagacttgaaagggcgctatccc
aagcattactggccggacgatccgctggtggccgaggctacggcgcgggccaaacccagg
aaagcctag
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