Pseudomonas sp. CCOS 191: CCOS191_4789
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Entry
CCOS191_4789 CDS
T03967
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psec
Pseudomonas sp. CCOS 191
Brite
KEGG Orthology (KO) [BR:
psec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psec03016
]
CCOS191_4789 (rtcB)
Enzymes [BR:
psec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CCOS191_4789 (rtcB)
Transfer RNA biogenesis [BR:
psec03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CCOS191_4789 (rtcB)
Prokaryotic type
tRNA splicing ligases
CCOS191_4789 (rtcB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4402
Motif
Other DBs
NCBI-ProteinID:
CRI59325
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All DBs
Position
I:complement(5411306..5412511)
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AA seq
401 aa
AA seq
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MNILEVAGGKPIKLWTDGVPVEDDARKQLMNTAKMPFIFKHLAVMPDVHLGKGSTIGSVI
PTVGAIIPAAVGVDIGCGMIAARTSLHARDLPDNLHGLRTAIEKAVPHGKTFGRRDQGAW
DNVPNQADQVWSGLAGRFKAITDKHPRLEKTNNRQHLGTLGGGNHFIEVCLDEADRVWFM
LHSGSRGVGNAIGNLFIELAQADMRQHMVNLPDRDLAYFEEGSRHFTDYVEAVEWAQDFA
RHNRELMMQAVVAATRKVLGKPFEASLEAVNCHHNYVQKEQHFGREVLVTRKGAVSAQKG
QLGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKSRFTVEDQQRATAHVECR
KDKDVIDEIPMAYKDIDAVMQAQRELVEVVHTLRQVVCVKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgaacatactcgaagtggcgggcggcaagccgatcaagctgtggaccgacggtgtgccg
gtcgaggacgacgcccgcaagcaactgatgaacacggcgaagatgccgttcatcttcaag
cacctggcggtgatgccggacgtgcacctgggcaagggctcgaccatcggcagcgtgatc
cccaccgtgggcgcgatcatcccggcggcggtgggcgtggacatcggctgcggcatgatc
gccgcgcgcacctcgctgcatgcccgcgatctgccggacaacctgcacggcctgcgtaca
gccatcgagaaggccgtgccccatggcaagaccttcggccgtcgcgaccagggtgcctgg
gacaacgtgccgaaccaggccgaccaggtctggagcggcctggccgggcgcttcaaggca
atcaccgacaagcatccgcgcctggagaagaccaacaaccgccaacacctggggacactc
ggcggcggcaaccacttcatcgaggtctgcctggacgaggccgaccgcgtctggttcatg
ctgcacagcggctcgcgtggcgtcggcaacgccatcggcaacctgttcatcgaactggcc
caggccgacatgcgccagcacatggtcaacctgccggaccgggaccttgcgtatttcgag
gaaggcagccggcacttcaccgactacgtcgaggcggtggagtgggcgcaggacttcgcc
cggcacaaccgcgaactgatgatgcaggcggtggtcgccgccacccgcaaggtgctgggc
aaaccgttcgaggccagcctcgaggcggtcaactgccaccataactatgtgcagaaagag
cagcacttcggccgcgaggtgctggtgacccgcaagggcgcagtgtcggcgcagaaggga
cagctgggcattatccccggctccatgggcgctaagagtttcatcgtgcgtgggttgggc
aacgaggagtcgttctgctcgtgcagccatggtgcgggccgggtgatgagccgcaccaag
gccaagagccgctttacggtcgaagaccagcaacgcgccactgcccatgtggagtgccgc
aaggacaaggatgtgatcgacgagatcccgatggcctacaaggatatcgatgcagtgatg
caggcccagcgtgagttggtcgaagtggtgcacaccctgcgtcaggtggtgtgtgtgaaa
ggttga
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