Pseudomonas sp. CCOS 191: CCOS191_4972
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Entry
CCOS191_4972 CDS
T03967
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psec
Pseudomonas sp. CCOS 191
Pathway
psec02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psec00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CCOS191_4972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psec03021
]
CCOS191_4972
Transcription machinery [BR:
psec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CCOS191_4972
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Rv2175c_wHTH
Sigma70_ECF
MerR
HTH_24
HTH_17
HTH_11
HTH_29
Sigma70_r3
PhyR_sigma-like
BrxR_CTD
HTH_28
HTH_3
Phage_terminase
Motif
Other DBs
NCBI-ProteinID:
CRI59508
LinkDB
All DBs
Position
I:5604156..5604674
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AA seq
172 aa
AA seq
DB search
MTSAHSPHAELVGALYRDHRTWLLAWLQRSTACRQRAEDLSQDTFVRLLGRERLDAPREP
RAFLVAVAKGLLFDHFRRAALEQAYLAELALLPEAEHPSPEQQHLILEDLKAIDRLLGKL
SSKARAAFLYNRLDGLGHAEIAERLGVSVSRVRQYIAQGLRQCYVALYGEPT
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
ttgacgtctgcgcacagtccacatgccgaactggtcggcgcgctgtaccgcgaccatcgc
acctggctgctggcctggctgcagcgcagcaccgcctgtcgccagcgtgccgaggacctg
agccaggacaccttcgtgcgcctgctcggccgcgagcgcctggacgccccccgcgaaccc
cgcgcctttctggtcgccgtggccaagggcctgttgttcgaccacttccgtcgtgccgcc
ctcgagcaggcctacctcgcggaactggcgctgctgcccgaagccgagcacccgtcaccg
gaacagcaacacctgatcctcgaagacctcaaggccatcgaccgcttgctgggcaaactg
tcgagcaaggcccgggcagccttcctgtacaaccgcctggacggcctggggcacgccgag
atcgccgagcgcctcggggtgtcggtctcgcgcgtgcgccagtacatcgcccaaggcctg
cgccagtgctatgtcgccctttacggggagccgacatga
DBGET
integrated database retrieval system