KEGG   Pseudomonas sp. CCOS 191: CCOS191_4972
Entry
CCOS191_4972      CDS       T03967                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
psec  Pseudomonas sp. CCOS 191
Pathway
psec02020  Two-component system
Brite
KEGG Orthology (KO) [BR:psec00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CCOS191_4972
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psec03021]
    CCOS191_4972
Transcription machinery [BR:psec03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CCOS191_4972
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 Rv2175c_wHTH Sigma70_ECF MerR HTH_24 HTH_17 HTH_11 HTH_29 Sigma70_r3 PhyR_sigma-like BrxR_CTD HTH_28 HTH_3 Phage_terminase
Other DBs
NCBI-ProteinID: CRI59508
LinkDB
Position
I:5604156..5604674
AA seq 172 aa
MTSAHSPHAELVGALYRDHRTWLLAWLQRSTACRQRAEDLSQDTFVRLLGRERLDAPREP
RAFLVAVAKGLLFDHFRRAALEQAYLAELALLPEAEHPSPEQQHLILEDLKAIDRLLGKL
SSKARAAFLYNRLDGLGHAEIAERLGVSVSRVRQYIAQGLRQCYVALYGEPT
NT seq 519 nt   +upstreamnt  +downstreamnt
ttgacgtctgcgcacagtccacatgccgaactggtcggcgcgctgtaccgcgaccatcgc
acctggctgctggcctggctgcagcgcagcaccgcctgtcgccagcgtgccgaggacctg
agccaggacaccttcgtgcgcctgctcggccgcgagcgcctggacgccccccgcgaaccc
cgcgcctttctggtcgccgtggccaagggcctgttgttcgaccacttccgtcgtgccgcc
ctcgagcaggcctacctcgcggaactggcgctgctgcccgaagccgagcacccgtcaccg
gaacagcaacacctgatcctcgaagacctcaaggccatcgaccgcttgctgggcaaactg
tcgagcaaggcccgggcagccttcctgtacaaccgcctggacggcctggggcacgccgag
atcgccgagcgcctcggggtgtcggtctcgcgcgtgcgccagtacatcgcccaaggcctg
cgccagtgctatgtcgccctttacggggagccgacatga

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