Pseudomonas sp. CCOS 191: CCOS191_5113
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Entry
CCOS191_5113 CDS
T03967
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psec
Pseudomonas sp. CCOS 191
Pathway
psec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCOS191_5113 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psec03021
]
CCOS191_5113 (rho)
03019 Messenger RNA biogenesis [BR:
psec03019
]
CCOS191_5113 (rho)
Transcription machinery [BR:
psec03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CCOS191_5113 (rho)
Messenger RNA biogenesis [BR:
psec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CCOS191_5113 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
CRI59649
LinkDB
All DBs
Position
I:complement(5782256..5783515)
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AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNKRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NKSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLVDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgacagaactcaagcaaaagccgattaccgatcttttggaaatggccgaacag
atgggcatcgaaaacatggcccgttcgcgcaaacaggacgtgattttcgccctgctgaaa
aagcatgcgaaaagcggcgaagagatctcgggtgacggcgtgctggagattctccaggat
ggtttcggtttcctgcgttcggcggatgcctcttacctggccggccctgacgacatctac
gtttcgcccagccagatccgtcgcttcaacctgcgcaccggcgacaccatcgtcggcaag
atccgcccaccgaaggaaggcgagcgttacttcgcgctgctgaaggtcgataccatcaac
ttcgaccgtccggaaaacgcgaagaacaagatcctgttcgaaaacctgacgccgctgttc
ccgaacaagcgcctgaaaatggaagccggtaacggctccaccgaagacctcaccggtcgc
gtcatcgacctgtgcgccccgatcggcaaaggccagcgtggcctgatcgtcgcaccgccg
aaagccggtaagaccatcatgctgcagaacatcgcggccaacattacccgcaacaacccc
gagtgccacctgatcgtcctgctgatcgacgagcgcccggaagaagtgaccgagatgcag
cgcactgtgcgcggcgaagtggtcgcctcgaccttcgacgagccgccgacccgccacgtg
caggttgccgaaatggtcatcgagaaggccaagcgcctggtcgagcacaagaaagacgtg
gtcatcctgctcgactccatcacccgtctggcgcgtgcctacaacaccgtgatcccgagc
tccggcaaggtactgaccggtggtgtcgatgcccacgccctggagaagccgaagcgcttc
ttcggtgccgcccgtaacatcgaggaaggcggttcgctgaccatcatcgccaccgcgctg
gtcgagactggctcgaagatggacgaagtgatctacgaagagttcaagggtaccggcaat
atggagctgcccctggaccgccgcatcgccgagaagcgtgtgttcccggccatcaacatc
aacaagtccggtacccgtcgcgaagagctgctgaccgccgacgacgaactgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggacgagatcgccgccatcgagttcctggtc
gacaagctcaagcagaccaagaccaacgatgagttcttcctgtcgatgaagcgcaagtaa
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