Stutzerimonas frequens: DM292_03950
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Entry
DM292_03950 CDS
T05921
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psed
Stutzerimonas frequens
Brite
KEGG Orthology (KO) [BR:
psed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psed03019
]
DM292_03950
Enzymes [BR:
psed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DM292_03950
Messenger RNA biogenesis [BR:
psed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DM292_03950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_25
nSTAND3
AAA_19
T2SSE
NACHT
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AWT09425
LinkDB
All DBs
Position
857275..861357
Genome browser
AA seq
1360 aa
AA seq
DB search
MTDATPAIDTLLKNLDQALFADRHRLRRQLHELRKQPDEAKLAQWLERFQASVAKVEARR
RSVPSIRYDDSLPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGVHGLI
GHTQPRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDSSLIKLMTDGILLAETQHD
RFLERYDTIIVDEAHERSLNIDFLLGFLKTLLPRRPDLKVIITSATIDLQRFSEHFDGAP
IVEVSGRTYPVETWYRPLAAEIDEDGNRVEDDLTVDQGILAALDEITAHEQSVGKRPGDV
LVFLPGEREIRDAAEVLRKANLKFTEVLPLYARLTPAEQQKIFQPRPGRKIVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYS
EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGDIQDFPFIEPPDGKAISDGFNLLQELS
AVNRENQLTPMGRQLARLPIDPRLGRMLLEAAQQGSLAEVLIVASALSVQDVRERPADRQ
QAADQAHAQWKDPDSDFAALINLWRGFEEQRQALGSNALRTWCRKNFLNYLRLREWRDAH
RQLTLIARELKLGSGRSAEGSGQPQHAAKARRVEDGAASSTRPVGASAQPVPTKDNKVNA
IVRQQAEASEAAQKAKGYAAVHKAILAGLLSQIGNKTEEGDFLGARQRRFWVHPSSVIGR
KKPNWLMAAELVETTKLFARMVAKIEPDWIEPLAGHLVKKNHFEPHWEKKRGQVVAYEQV
TLYGLIVVGRRPLHYGPIDPPAARELFIREGLVRGEISSRARALTANRELLERMDELEAK
ARRRDILADEETLFGYYDARVPADIYQTASFENWYKRESQKDPQLLIMREEDVLAREARE
VTAAQYPDHLRIGELQLPLEYHFEPNHPRDGVTLRVPAPLLPQLRRERLDWLVPGLIEAK
AIALVRGLPKAIRKNFVPVPDFVGAALAKISFGEGALPEALGRELTRMTGARVPDEAWAE
AAAGLENHLKMNIEVVDARGKFLGEGRDLAELTARFAEASQAALAPPQQKAEQKPVEAKG
FAQVAEKVQAKMAGLSMTVYPALVEEAGVVKEARFPTQAEADWQHRRALQRLLLQQLAEP
AKYLRNKLPGLTELGLLYRDMGKVDALVEDILLASLDSSILDGEAQLPRDGAALASLAER
KRGDWTAHAERLARLTLEVLKHWHGLQKRFKGKIDLAQAVALNDIKAQLGNLVYPGFVRE
TPAEWLKEYPRYLKAIEQRFEKIGAQLQRDRVWSGELGGYWEQYQARLHKHQQEGKRDPE
LTLYRWMLEEYRVSLWAQQLGTKMPVSDKRLNKQWSQVEP
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgcaacgcccgctatcgataccctgctgaagaatctcgaccaggccctgttc
gccgatcgccatcgcctgcgccggcagctgcatgagctgagaaagcaaccggacgaggcc
aagctcgcccaatggctggagcgttttcaggcgtccgtagccaaggtcgaggctcgccgt
cggagtgtgccgagcatacgctacgacgacagcctgccgatcgcggccaagcgcgacgag
atcaaggccgcgctggaaaagcatcaggtgctggtgatcgccggtgagaccggctcgggc
aagaccacccagctgccgaagatctgccttgagatcggccgtggcgtgcacgggctgatc
ggccatacgcagccgcgccggctggcggcacgcagcgtcgcgactcgggtggccgaggaa
atcggcacgccactcggcgagctggtgggttatcaggtgcgcttcgaggatcagagcaag
gacagctcgctgatcaagctgatgaccgacggcatcctgctggccgagacgcagcacgac
cggttcctcgagcgttacgacaccatcatcgtcgacgaggcccacgaacgttcgctgaac
atcgatttcctgctcggcttcctcaagactctgctgccgcggcggccggacctgaaggtg
atcatcacttcggcgaccattgacctgcagcgcttttccgagcacttcgacggtgcaccc
atcgtcgaggtatccgggcgtacctacccggtggagacctggtatcggccactggcggcc
gagatcgacgaggatggcaaccgggtcgaggatgatctgaccgtcgaccagggcatcctc
gccgcgctggacgaaattacggcccacgagcagagcgtgggcaagcgccccggcgacgtg
ctggtgttcctgcccggcgagcgcgagattcgcgacgcggccgaggtgctgcgcaaggcc
aatctgaagttcaccgaggtgctgcccctgtatgcgcggctgacgccggccgagcagcag
aagattttccagccgcgaccggggcgcaagatcgtgctggccaccaacgtcgccgagacg
tcgctgaccgtgcccggtatccgctacgtgatcgattccggcaccgcgcgcatcagccgc
tacagctaccgcgccaaggttcagcgcctgccgatcgaggcggtatcacaggccagcgcc
aaccagcgcaagggtcgctgcgggcgggtcgagccaggtatctgcattcgcctgtacagc
gaggaagatttcctcggtcggccggaattcaccgatcccgaaatcctgcgtaccaacctc
gccgcggtgatcctgcagatgctgcatctgcgcctgggggatatccaggatttccccttt
atcgagccgccggatggcaaggccatcagcgacggtttcaacctgttgcaggagctctcg
gcggtcaatcgcgaaaaccagctgaccccaatgggtcgccagttggcgcgcctgccgatc
gacccgcggttgggccgcatgctgctcgaagccgcgcagcagggcagtctggccgaggtg
ctgatcgtggccagcgcgctgtcggtgcaggacgtgcgcgagcgcccggccgaccgccag
caggccgccgaccaggcccatgcgcaatggaaggacccggactcggacttcgccgcgctg
atcaacctctggcgcggtttcgaggagcaacgccaggcgctgggctccaatgcgctgcgc
acctggtgccggaagaacttcctcaactacctgcgtctgcgtgagtggcgcgacgcccat
cgccagctgacgctcatcgcccgcgagctcaagcttggttcgggtaggtcggcggaaggc
tccggccaaccacagcacgccgccaaggcacgtagggtggaagacggcgcagcctcttcc
acgcgtccggtgggggccagcgcccaacccgtgccgaccaaggacaacaaggtcaacgcc
atcgtccgccagcaggccgaagccagcgaggccgcgcagaaggccaagggttacgccgcg
gtgcacaaggcgattcttgccggtctgctcagccagatcggcaacaagaccgaggagggc
gacttcctcggtgcccgccagcgacgcttctgggtgcatccttccagcgtgatcgggcgc
aagaaacccaactggctgatggccgcggaactcgtggaaaccaccaagctgttcgcgcgc
atggtcgccaagatcgagccggactggatcgagccgctggccggccacctggtcaagaag
aaccacttcgagccgcactgggagaagaagcgcggccaggtggtggcctacgagcaggtc
acgctctacggcctgatcgtggttggtcgccgcccgctgcactacgggcccatcgaccct
ccggcggcacgcgagctgttcatccgcgagggcctggtgcgtggcgagatcagcagccgt
gcccgcgcgctgacagccaaccgcgagctgctcgagcgcatggacgagctggaggccaag
gcgcggcgccgcgacatcctcgccgacgaggaaaccctgttcggttactacgatgcgcgt
gtgccagcggacatctaccagaccgccagcttcgagaactggtacaagcgcgagagccag
aaagacccgcagctgttgatcatgcgcgaggaagacgtgctcgcccgcgaggcgcgcgaa
gtcaccgccgcgcagtatccggatcacctgcgcatcggcgagctgcagttgccgctggaa
taccatttcgaacccaaccacccccgcgacggcgtgaccctgcgcgtgccggcgccgctg
ctgccgcaactgcgccgcgagcggctcgactggctcgtgcccgggctgatcgaagccaag
gcgatcgcgctggtgcgcggcctgccgaaggcgatccgcaagaacttcgtgccggtgccg
gacttcgtcggcgcggcactggccaagatcagctttggcgaaggcgccttgcccgaggcg
ctgggccgcgagctcacccgcatgaccggcgcccgtgtgccggacgaggcctgggccgag
gccgctgccgggctggaaaaccacctgaagatgaacatcgaggtggtcgatgcgcgcggc
aagttcctaggcgaaggccgcgacctggccgagctgaccgcgcgcttcgccgaggccagc
caagccgcgctggcgccgccgcagcagaaggccgagcagaagccggtcgaggccaagggt
tttgcccaagtcgcggaaaaggtgcaggcgaagatggccggcctgtcgatgacggtctac
ccggcgctggtcgaggaggccggggtggtcaaggaggcgcgcttcccgacccaggccgag
gccgactggcagcaccgccgcgccctgcagcgcctgttgctgcaacagctggcggaaccc
gccaagtacctgcgcaacaagctgccggggctcaccgaactgggcctgctctaccgtgac
atgggcaaggtcgatgcgctggtcgaggacatcctgctggccagcctggacagcagcatc
cttgacggcgaagcccagctaccgcgtgatggcgccgcgctggcgtcgctggccgagcgc
aagcgcggcgactggaccgcgcatgccgagcgcctggcgcggctgacgctggaagtcctc
aagcactggcacggcctgcagaagcgcttcaagggcaagatcgatctggcccaggcggtg
gcgctcaacgacatcaaggcgcagctgggcaacctggtctatccgggctttgttcgcgaa
acgccggccgagtggctgaaggaatacccgcgctatctgaaggccatcgagcaacgcttc
gagaagatcggcgcgcagctgcagcgtgatcgcgtctggtccggcgagctgggcggctac
tgggagcaataccaggcgcgactgcacaagcaccagcaggaaggcaagcgcgatcctgaa
ctgacgctctatcgctggatgctcgaggaatatcgcgtctcgctctgggcacagcagctg
ggtacgaaaatgccggtatccgacaagcgcctgaacaagcagtggagccaggtcgagccc
tga
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integrated database retrieval system
