Stutzerimonas frequens: DM292_04925
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Entry
DM292_04925 CDS
T05921
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
psed
Stutzerimonas frequens
Pathway
psed03410
Base excision repair
psed03430
Mismatch repair
psed03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DM292_04925 (recJ)
03430 Mismatch repair
DM292_04925 (recJ)
03440 Homologous recombination
DM292_04925 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psed03400
]
DM292_04925 (recJ)
DNA repair and recombination proteins [BR:
psed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DM292_04925 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DM292_04925 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DM292_04925 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AWT09604
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All DBs
Position
1048623..1050338
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AA seq
571 aa
AA seq
DB search
MRIEPRPLPEQLPDLGELPPLLQRLYAARGVTCAAELDKGLARLIPYKQLKGIDAAVELL
VEALEKRQRILFVGDFDADGATASSVGVLGLRQLGAAHVDYLVPNRFEYGYGLTPEIVAV
ALQREPDLLVTVDNGISSVDGVAAAKAAGLRVLVTDHHLPGHELPAADAIVNPNQPECTF
PSKCIAGVGVIFYVLLALRARLRELNWFARQGWDEPNLAELLDLVALGSVADVVPLDANN
RILVHQGLARIRAGRARPGLRAILEVAGRDHRRITSTDLGFILGPRLNAAGRLDDMSLGI
ECLLCEDEALARDMATQLDELNKDRKAIEQGMQREALAQLKDLPLEDLPFGLCLFEADWH
QGVIGILASRLKERYHRPTIAFADAGDGLLKGSARSVPGFHIRDALDAVAARHPGLISKF
GGHAMAAGLSLPQANFGAFAAAFDAEVRRQLCEDDLTGRLLTDGQLSVEEFHLELARALR
NAGPWGQHFPEPMFHGVFQLVQQRIVGERHLKLVLKSECGSLTLDGIAFNVDREIWPNPT
VRWAELAYKLDVNEYRGQESVQLMVAHIAPR
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgaaccccgccccctgcccgagcagctgcccgatcttggcgagctgccgccg
ctgctgcagcgcctctacgcggcgcgtggcgtgacctgcgcagcggagctggacaaggga
ttggcacggctgattccttataagcagctcaagggcatcgatgccgcggtcgagctgctg
gtcgaggcgctggaaaagcgccagcgcatcctgttcgtcggcgatttcgatgccgatggc
gccaccgcgagcagcgtcggtgtgctcggcttgcgtcagctgggcgccgcacatgtcgat
tatctggtacccaatcgcttcgagtacggctacggcctgaccccggaaatcgtcgccgtc
gccttgcagcgcgagcccgacctgctggtgaccgtggataacggcatctccagcgtcgat
ggcgtcgcggcggcgaaggcggccgggttgcgggtgctggtcaccgaccaccatctgccc
ggtcacgagctgccggcggccgatgccatcgtcaatcccaaccagccggaatgtaccttc
ccgagcaagtgcatcgccggggttggcgtcatcttctatgtgctgctggcattgcgcgcg
cggctgcgtgagctgaactggttcgcccgtcagggctgggacgagccgaacctggccgag
ctgctcgatctggtggcgctgggcagcgtcgccgacgtggtgccgctggacgccaacaac
cgcattctggtccaccagggcctggcgcgaattcgcgcggggcgggctcggccggggctg
cgggcgattctcgaggtggccgggcgcgatcatcggcgcatcacctccaccgacctgggc
ttcatcctcggccctcgactgaacgcggccggtcggctggatgacatgtcgctgggcatc
gaatgcctgctctgcgaggacgaggcgctggcgcgcgacatggcgacccagctcgacgag
ctgaacaaggatcgcaaggccatcgagcagggcatgcagcgcgaggcgctggcgcagctc
aaggacctgccactggaggacctgccgttcggcctgtgtctgttcgaggcggactggcac
cagggcgtgatcggcatcctcgcctcgcgcctcaaggagcgctaccaccgcccgaccatc
gccttcgccgatgctggcgacgggctgctcaagggctcggcgcgctcggtgccgggcttt
catatccgcgatgcgctggacgcggttgccgccaggcatcccggcctgatcagcaagttc
ggcgggcacgccatggcggccgggctgtcgctgccgcaagccaacttcggtgccttcgcc
gccgccttcgatgccgaggtgcgccgccagttgtgcgaggacgatctcaccggccggctg
cttaccgacggccagctcagcgtcgaggaatttcatctggaactcgcccgcgctctgcgc
aacgccgggccctggggccaacattttcccgagccgatgttccacggtgtgttccagttg
gtgcagcagcgtatcgtcggtgagcgccatctcaagcttgtgctgaagagcgaatgcggc
tcgctgacgctggacggtatcgccttcaacgtcgaccgcgaaatctggccgaacccgacg
gtgcgctgggcggagctggcctacaagctcgacgtcaacgagtatcgcggccaggaaagc
gtgcagctgatggtggcgcatatcgccccgcgctga
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