Stutzerimonas frequens: DM292_05400
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Entry
DM292_05400 CDS
T05921
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psed
Stutzerimonas frequens
Brite
KEGG Orthology (KO) [BR:
psed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psed03009
]
DM292_05400
Enzymes [BR:
psed01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DM292_05400
Ribosome biogenesis [BR:
psed03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DM292_05400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_11
Cons_hypoth95
MTS
PCMT
TRM5-TYW2_MTfase
PrmA
Methyltransf_15
Methyltransf_23
Methyltransf_12
Methyltrans_SAM
UPF0020
Motif
Other DBs
NCBI-ProteinID:
AWT09687
LinkDB
All DBs
Position
1147810..1149174
Genome browser
AA seq
454 aa
AA seq
DB search
MAKRSGALRFQPSGGERRPQVPVGKKQRLSIERLANDGRGIAFIEGRTWFVEGALPGEEV
ETRVLAARSQIVEARCERVLQASAQRQVEPCPHARLCGGCNLQHSPFTDQLALKQRTLAE
QLTRVADLQPEAWAEPLVGPAFGYRRRARLAVRWNVKSKHLDIGFRASASQDVISISECP
VLVQPLQSLLPALLAALRDLGKPQAIGHVELFSGTAEAVLIRHTAALPEADVARLRSFAS
ANAAQLWWQGEGEPEPDDPAAKLGYRLDAWDLELAWRPGDFVQVNASVNDAMVAQALEWL
GAGKDEAVLDLFCGLGNFSLPLARIGARVVGVEGVEAMVARARENARYNGIETAHFYRAD
LSKPLADAPWADGGFAAVLLDPPRDGALEIVRQMSMLRAQRVVYVSCNPATLARDARELA
SQGYRLKRAGVLDMFPQTAHVEAMALFEGPDAPR
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacgtagcggcgctctgcgctttcaacccagtggcggcgagcgcaggcctcaa
gtaccggtcggcaagaagcaacggctgagtatcgagcggctggccaatgacggacgcggt
atcgccttcatcgagggacgcacctggttcgtcgagggcgcgttgcccggcgaagaggtc
gagacgcgcgtgttggctgcgcgcagtcagatcgtcgaggcgcgctgcgagcgtgtgctt
caggccagtgcgcagcgtcaggtcgagccctgtccacatgcccgtctgtgtggcggttgc
aacctgcagcattcgccctttaccgatcagcttgccctgaagcagcgcacgcttgccgag
cagctcacgcgggtggccgacttgcagccggaggcatgggccgagccgctggtgggccca
gccttcgggtatcgccgccgggcgcggctggcggtgcgttggaacgtcaagagcaagcac
ctcgatatcggtttccgtgccagcgccagccaggacgtcatctccatcagtgaatgcccg
gttctggtacagcctttgcagtcgctgctgccggcattgctggcagcgctacgtgatctg
ggtaagccgcaggcgatcggtcatgtcgaactcttcagtggtacggccgaggcggtgctg
attcgtcacaccgccgccctgcccgaagcagacgtcgcacgtctgcgcagcttcgctagt
gccaatgcagcgcagctctggtggcagggcgaaggtgagccggagccggatgatcccgcg
gcgaagctgggttatcggctggatgcctgggatctggaactggcctggcggccgggggat
ttcgtccaggtcaacgcgtcggtcaacgatgcgatggtggctcaggcgctggaatggctg
ggcgcgggcaaggacgaagcagtgctggatctgttctgtgggctgggcaacttcagcctg
ccgctggcgcgcatcggcgctcgggtggtgggcgtcgaaggtgtcgaggcgatggtcgcg
cgtgcgcgggaaaacgcccggtacaacggcatcgagacggcgcacttttatcgtgccgac
ttgtcgaagccgcttgccgatgccccctgggcggacggcggtttcgctgcggtgctgctc
gatccaccgcgcgatggcgcgctggaaatcgttcgacaaatgtcgatgctgagggcgcag
cgggtggtctatgtttcatgcaatcctgccaccctggcgcgcgacgcacgtgagctggcc
agccagggctaccgactcaagcgtgcaggtgtgctggacatgttcccgcagacggcccac
gtcgaggccatggcactgttcgaggggcccgacgcaccgcggtga
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