Stutzerimonas frequens: DM292_15400
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Entry
DM292_15400 CDS
T05921
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psed
Stutzerimonas frequens
Pathway
psed03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psed00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DM292_15400 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psed03021
]
DM292_15400 (rpoB)
03400 DNA repair and recombination proteins [BR:
psed03400
]
DM292_15400 (rpoB)
Enzymes [BR:
psed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DM292_15400 (rpoB)
Transcription machinery [BR:
psed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DM292_15400 (rpoB)
DNA repair and recombination proteins [BR:
psed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DM292_15400 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
IniB
Motif
Other DBs
NCBI-ProteinID:
AWT11495
LinkDB
All DBs
Position
complement(3280319..3284389)
Genome browser
AA seq
1356 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPHVMDVPYLLAIQLDSYREFLQAGATKDQFRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALNYSTEEILDAFYDTNIFHVKGET
LALELVPQRLRGEIATFDIKDDSGKVIVEQGRRITARHINQLDKSGIKELEMPMDYVLGR
TVAKAIVHPATGEIIAECNTELTVDVMAKIVKAQVVRFETLYTNDIDCGPFISDTLKIDS
TTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFAAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSREDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DGEVTDEIVFLSAIEEADHVIAQASAKLDGRKLVDELVAVRHLNEFTVKAPEDVTLMDVS
PKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSDKPLVGTGMERNVARDSGVCV
VARRGGVIDSVDASRIVVRVRDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGDV
VARGDIMADGPSTDMGELALGQNMRVAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQEL
TCVSRDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGPGDILVGKVTPKGETQLT
PEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFIRDGVERDSRALAIEKMQLDEI
RKDLNEEFRIVEGATFERLRSALVGATAEGGAGLKKGVVITDEILDGLEHGQWFKLRMTE
DALNEQLEKAQAYLSDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPGD
KMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKGL
GEKINLMLEEQRKVAELRKFLHEIYNEIGGRQESLDDLSDQEVLDLANNLRKGVPMATPV
FDGAKEREIKAMLKLADLPESGQMQLFDGRTGNKFERTTTVGYMYMLKLNHLVDDKMHAR
STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK
NIVDGDHRMEAGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttaccgcac
gtgatggacgtgccgtatcttttggccatccagctggattcgtatcgcgaattcctgcag
gcgggagcgaccaaagatcagttccgcgacattggcttgcatgcagccttcaaatccgtt
ttcccgattatcagctattccggcaatgcagcgctggagtacgtcggctatcgcctgggc
gagccggctttcgatgtcaaggaatgtgtcctgcgcggcgtgaccttcgccgttccgctg
cgcgtcaaggtgcgcctgatcattttcgacaaagagtcgtcgaacaaggccatcaaggac
atcaaggaacaggaagtctacatgggggaaatccccctcatgacggagaacggtaccttc
atcatcaacggtaccgaacgcgtcatcgtttcccagctgcatcgttcgccgggcgtgttc
ttcgatcatgaccgcggcaagacccacagctccggcaagctgctgtactccgcgcgcatc
attccttaccgcggctcctggctggacttcgagttcgatccgaaggatgccgtcttcgtc
cgtatcgaccgtcgccgcaagctgcccgcgtcggtacttctgcgcgcgctgaactacagc
accgaagagatcctggacgccttctatgacaccaacatcttccatgtgaagggcgaaacc
ctcgcattggagctggtgccgcagcgtctgcgcggtgagatcgcgaccttcgacatcaag
gatgacagcggcaaggtcatcgtcgaacagggccgtcgtatcaccgctcgccatatcaac
cagctcgacaagtccggcatcaaagagctcgagatgccgatggactacgttttgggtcgt
accgtcgccaaggcgatcgtacatcctgccactggtgagatcatcgccgagtgcaacacc
gagctgaccgtcgacgtcatggcgaagatcgtcaaggcgcaggtcgtgcggttcgagacg
ctgtacaccaacgacatcgattgcggtccgtttatttccgacacgctgaagatcgattcg
accaccaatcagctcgaagcgctggtcgagatctaccgcatgatgcgcccgggcgagccg
ccaaccaaggacgctgccgagacgctgttcaataacctgttcttcgctgctgagcgctac
gatctgtcggctgtcggccggatgaagttcaaccgccgtatcggtcgcaccgagatcgag
ggctccggcgtactgagccgtgaggacatcgtcgcggttctgaagaccctggtcgacatc
cgcaacggcaagggcatcgtcgatgacatcgaccacctgggtaaccgtcgcgtgcgctgt
gttggcgaaatggccgagaaccagttccgcgttggcctggtgcgcgtcgagcgtgcagtc
aaagagcgtctgtcgatggccgaaagcgaaggcctgatgccgcaggacctgatcaatgcc
aagccggttgcggcggcggtgaaggagttcttcggttccagccagctctcgcagttcatg
gaccagaacaacccgctttcggagatcacccacaagcgccgcgtctccgcactcggcccg
ggcggtctgacccgtgagcgcgccggcttcgaggtgcgtgacgtgcacccgactcactac
ggccgtgtctgcccgatcgaaacccctgaaggtccgaacatcggtctgatcaactccctg
gctgcctatgctcgcaccaaccagtatggcttcctcgaaagtccgtaccgtgtggtcaag
gacggcgaagtcaccgacgaaatcgtgttcctttcggcgatcgaagaagccgaccacgtg
atcgcccaggccagcgccaagctggacggtcgcaagctggtcgacgagctggtggctgtg
cgtcatctgaacgaattcaccgtcaaggctccggaagacgtgaccctgatggacgtctct
ccgaagcaggtcgtctccgtcgctgcctctctgattccgttcctcgagcacgacgacgcc
aaccgcgcgctgatgggttccaacatgcagcgtcaggccgtgccgaccctgcgttcggac
aaaccgctggtaggtaccggcatggagcgcaacgtggcacgcgactcaggcgtctgcgtg
gtcgctcgtcgcggcggcgtgatcgactcggtcgatgccagccgtatcgtggtgcgcgtg
cgtgacgatgaggtcgagaccggcgaagcgggtgtcgacatctataacctcaccaagtac
acccgctccaaccagaacacctgcatcaaccagcgtccgctggtgcgcaagggtgacgtg
gtggcgcgtggcgacatcatggccgatggtccgtccaccgacatgggtgagctggcactg
ggtcagaacatgcgcgtcgcgttcatgccgtggaacggctacaacttcgaggactccatc
ctcctctcggagcgtgtggttcaggaagatcgtttcaccactatccatatccaggaactc
acctgcgtgtcgcgcgacaccaagctcggcccagaggagatcaccgcggatatcccgaac
gtgggtgaggctgcgctgaacaagctggacgaggccggtatcgtctacgtcggtgccgaa
gtcggtccgggcgacatcctggtcggcaaggtgacgccgaagggcgaaacccagctgacg
ccggaagagaagctgctgcgcgcgatcttcggtgagaaggcgtccgacgtgaaggacacc
tccctgcgtgtgccgaccggcaccaagggaaccgtcatcgatgtgcaggtgttcatccgc
gacggcgtcgagcgcgactcccgtgcgctggccatcgagaagatgcagctcgacgagatc
cgcaaggatctcaacgaagagttccgtatcgtcgaaggcgccacgtttgagcgcctgcgc
tcggcgttggtcggtgcgactgcggagggcggcgccggcctgaagaaaggtgtcgtgatc
accgacgagattcttgatgggctcgagcatggccagtggttcaagctgcgcatgaccgaa
gacgcgctgaacgagcagttggagaaggcgcaggcctacctctccgatcgccgccagctg
ctcgacgacaagttcgaggacaagaagcgcaagctgcagcagggcgacgacctcgcgccg
ggcgtgctgaagatcgtcaaggtctacctggcgatcaagcgccgcatccagccgggcgac
aagatggccggccgtcacggtaacaagggtgtggtctcggtgatcatgccggtcgaagac
atgccgcacgatgccaatggcacgccggtggacatcgtcctgaacccgctgggtgtaccg
tcgcgtatgaacgtcggtcagatcctcgaaacccacctgggcctcgcggccaagggcctg
ggcgagaagatcaacctgatgctcgaagagcagcgcaaggtcgccgagctgcgcaagttc
ctgcatgagatctacaacgaaatcggtggtcgccaggaaagcctggacgacctgagcgat
caggaggtgctggacctggcgaacaacctgcgcaagggcgttcccatggccaccccggta
ttcgatggtgccaaggagcgcgagatcaaggccatgctgaagctggccgatctgccggaa
agcggtcagatgcagctgttcgacggacgtaccggcaacaagttcgagcgcaccaccacg
gtcggctacatgtacatgctgaagctgaaccacctggtcgacgacaagatgcacgcgcgt
tctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggcgcagttcggt
ggtcagcgcttcggggagatggaggtctgggcgctggaagcctacggcgccgcgtacacc
ctgcaggaaatgctcacggtcaagtcggacgacgtgaacgggcggaccaagatgtacaag
aacatcgtggacggcgatcaccgtatggaggccggcatgccggaatccttcaacgtgctg
atcaaagagatccgctcgctcggtatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
