Entry |
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Name |
(GenBank) DNA polymerase I
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KO |
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Organism |
psed Stutzerimonas frequens
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:psed00001]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DM292_18535
03410 Base excision repair
DM292_18535
03420 Nucleotide excision repair
DM292_18535
03440 Homologous recombination
DM292_18535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:psed03032]
DM292_18535
03400 DNA repair and recombination proteins [BR:psed03400]
DM292_18535
Enzymes [BR:psed01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DM292_18535
DNA replication proteins [BR:psed03032]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DM292_18535
DNA repair and recombination proteins [BR:psed03400]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
DM292_18535
NER (nucleotide excision repair)
GGR (global genome repair) factors
DM292_18535
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
complement(3950642..3953386)
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AA seq |
914 aa
MSQAPLVLVDGSSYLYRAFHALPPLTTSTGKPTGAVKGVLNMLLSLRKQYPDSPFAVVFD
AKGPTFRDALFENYKSHRPPMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR
QCAALGRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDIEGVKNKFGVGPELIIDFLALM
GDKVDNIPGVPGVGEKTACGLLNGIPGGLKGLYENLDQVAGLPIRGAKSLGAKLEEHRDA
AFMSYELATIKIDVPLDVQVGDLMPGEPHREALIALYRELEFKQWLDELLREAKAAGESC
EVQPEGCSIQAEAQYETLLEQADFERWLARLKAAECFAFDTETTSLDAQRAELVGVSFAV
EPGQAAYVPLRHSYMGVPQQLELDAVLGALKPLLEDPAKTKICQHGKYDINVLMHYGIEM
RGMAFDTMLESYVLDATATRHDMDSLALKYLGRGTIRFEDIAGKGAKQLTFDQIAIEQAG
PYAAEDADVTLRLHQTLLGKLEQTPSLLRVLTEIEMPLVPVLARIERNGALVDAQLLGQQ
SVELGDKLVQLEREAFDIAGEEFNLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLA
ELAEQDYPLPKVIMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATGRLSSSDP
NLQNIPIRTAEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLLHAFQNDLDVH
RATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAFGLAKQIDVGRKEAQEYIDRYFAR
YPGVLAYMERTRTQAAEQGYVETLFGRRLYLPEINSKNGAMRKGAERTAINAPMQGTAAD
IIKRAMIAVDGWLQDSGLDARVILQVHDELVLEVREDLVEQVRQQICPLMSEAAQLDVPL
LVEAGVGNNWDEAH |
NT seq |
2745 nt +upstreamnt +downstreamnt
atgagccaagcccccctcgtcctggtggacggttcgtcctatctgtaccgcgcgttccac
gcgctgcctccgctgaccacctctaccggcaagccgaccggtgcggtcaagggtgtgctg
aatatgttgctgagcctgcgcaaacagtatccggacagcccgttcgccgtggttttcgac
gccaagggtccgaccttccgcgacgcgctgttcgagaattacaagtcgcaccgcccgccg
atgccggatgacctgcgcgtgcaggtcgagccgctgcatgccagcgtccgtgcactgggg
ctgccgctgctgtgcgtggaaggggtcgaggccgacgacgtcatcggcaccctggcgcga
caatgcgcggcgctgggccgtgatgtggtgatctccaccggcgacaaggacatggcccag
ctggtctgcccgcacgtcacgctggtcaacaccatgaccggcagcgtctatgacatcgag
ggcgtgaagaacaagttcggcgtcggcccggaactgatcatcgacttcctcgcgctgatg
ggcgacaaggtcgacaacattcctggtgtgccaggcgtgggcgagaagacggcatgtggc
ctgctcaacggcatcccgggcgggctcaaggggctctacgagaacctcgatcaggtcgcc
gggctgccgattcggggtgccaagtcactgggcgccaagctggaggagcatcgcgatgcc
gccttcatgtcctacgagctggcgacgatcaagatcgacgtgccgctggacgtccaggtc
ggtgacctgatgcccggggaaccgcaccgtgaggcgctgatcgccctttatcgcgagctg
gaattcaagcagtggctggacgagctgctgcgcgaggccaaggcggctggggagagctgc
gaggtgcagccagaaggctgttcgatccaggccgaggcccagtacgagacgctgctggag
caggccgatttcgagcgctggctggcgcgtctgaaggcggccgagtgctttgccttcgat
accgaaaccaccagcctcgatgcgcagcgcgccgagctggtcggcgtgtccttcgccgtg
gagccgggccaggcggcttacgtgccgctgcgccattcctacatgggcgtgccgcagcag
ctcgagctggatgccgtgctcggcgcgctcaagccgctgctggaagatccggccaagacc
aagatctgccagcacggcaaatacgacattaacgtgctgatgcactacggcatcgagatg
cgcggcatggccttcgacaccatgctcgaatcctacgtgctggacgccaccgccacccgc
cacgacatggacagcctggcgctcaagtacctcggccgcggcaccatccgcttcgaggac
attgccggcaagggcgccaagcagctgaccttcgaccagatcgcgatcgaacaggccggc
ccgtacgccgccgaggacgccgacgtcaccctgcgcctgcatcagaccctgctcggcaag
ctggagcagacgccatcgctgctcagggtgctgaccgagatcgagatgccgctggtgccg
gtgctggcgcgcatcgagcgcaacggcgcgctggtcgatgcacagctgctcggccagcag
agcgtcgagctgggcgacaagctggtgcagctggaacgcgaggccttcgacatcgctggc
gaggaattcaacctcggctcgcccaagcagctctgcgcaatcctctacgacaagctcggc
tgtccggtgatctccaagaccgccggcggccagccgtccaccgccgaaagcgtgctggct
gaactggccgagcaggattacccgctgcccaaggtgatcatgcagcaccgctccttgagc
aagctcaagggcacctacaccgacaagctgccacagcagatcaacccgcgcaccgggcgc
atacacaccagctaccaccaggcggtgaccgccaccggccggctatcctccagcgacccg
aacctgcagaacatcccgatccgcaccgccgaggggcggcgcattcgccaggccttcgtc
gcagcgccgggctacaagctgctggcggcggactactcgcagatcgagctgcgcatcatg
gcccacctggcgcaggatgccggcctcttgcacgcgttccagaacgatctggacgtgcac
cgcgccacggccgccgaggtgttcggcgtaccgctggagcaggtcagcaacgaccagcgc
cgcagcgccaaggccatcaacttcggcctgatctacggcatgagcgccttcggcctggcc
aagcagatcgacgtcggccgcaaggaggcgcaggagtacatcgaccgctatttcgcccgc
taccccggcgtgctcgcctacatggagcgcacccgcacccaggccgcggagcagggctat
gtcgagacgctgttcggtcggcggctgtacctgccggagatcaattcgaagaacggcgcc
atgcgcaagggcgccgagcgcaccgcgatcaacgcgccgatgcagggcaccgcggcggac
atcatcaagcgcgccatgatcgccgtggacggctggctgcaggacagcgggctggatgcg
cgggtgatcctgcaggtccacgatgaattggtgctggaagtgcgcgaagacctggtcgag
caggtccgtcagcagatctgcccgttgatgagcgaggcggcccagctggacgtgccgttg
ctggtcgaggccggcgtgggcaacaactgggacgaggcgcactga |