Stutzerimonas frequens: DM292_20340
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Entry
DM292_20340 CDS
T05921
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
psed
Stutzerimonas frequens
Pathway
psed03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DM292_20340 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psed03400
]
DM292_20340 (recD)
Enzymes [BR:
psed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DM292_20340 (recD)
DNA repair and recombination proteins [BR:
psed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DM292_20340 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
SH3_13
UvrD-helicase
Helicase_RecD
AAA_22
SLFN-g3_helicase
AAA_16
UvrD_C
nSTAND3
CbiA
AAA_28
DEAD
AAA_5
Flavi_DEAD
T2SSE
Terminase_6N
DUF87
ATPase
AAA
Motif
Other DBs
NCBI-ProteinID:
AWT12398
LinkDB
All DBs
Position
4339757..4341607
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AA seq
616 aa
AA seq
DB search
MTLPAELPLGPLERAFVASLQRLEPEASEPVLLAAALCCEALSAGDVCLPLERLAGRRPW
PDVDLSMPSLPVWRAQLEASSLVGAPDDYAPLTLLGNRLYLARYQAYEQQLAEQLLARAG
DAPEVDEVWLAESLARLFAFNQQRPDWQRLAAAQAVRRRLAVISGGPGTGKTTTVVRLLA
ALLEQPGGERLAIGLAAPTGKAAARMAEAIRNAKAELPVSDAVKAALPDEARTLHRLLGS
RGDSPRVRHDAANPLALDVLVVDEASMVDLALMAKLVVALPPKTRLILLGDKDQLAAVEA
GAVFAELCEGRGFDARAASELERITGQPVPVETPRSRLGDAVVLLTHSHRFAGDSGIGEL
ARRINAGDAKGTVALLQEGRADLAWNAAPSPTALIERLEQGYSPYLQAARQGDPGAVFEA
FNGFRALTAQREGPFGVTGINEALETRFRRRLGVPARERWYPGRAVMVRQNDYALGLFNG
DIGLCLKTEQGLRVFFEGDDGYRGFAPARLPSHDSAFAMTVHKSQGSEFAEVLLALPDQP
SPLLTRALFYTGITRAKRQVEIWALPARLAEAVSTRAERAAGLAERLNSAAAAGEAAALT
PRSPAQAPPGDQLSLF
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgaccctgcctgcagagctacccctcggcccattggagcgcgcctttgttgccagcctg
caacgccttgagccagaggcgtccgagccggtgctgctcgccgccgcgctgtgctgcgag
gcgctgtcggccggcgatgtctgtctgccgctggaacgcctggctggcaggcggccctgg
cccgatgtcgatctcagcatgccgtcactacccgtctggcgcgctcagctcgaagcctct
tcgctggtcggtgcaccagacgactacgcgccgctgaccctgctcggcaaccggctttac
ctggcccgctaccaggcctacgaacagcagctggccgaacagctgctggcccgcgccggc
gatgcgcccgaggtggacgaagtatggcttgccgagagcctggcgcggctgttcgccttc
aatcagcagcgccccgactggcagcgcctggccgccgcccaggcagttcggcgtcggctg
gcggtgatctccggcggtcccggcaccggcaagaccactaccgtggtgcgcctgctggcg
gcgctgctcgagcagcctggcggcgagcgcctggccatcggcctcgccgcacccaccggc
aaggccgcggcgcgcatggccgaggcgatccgcaacgccaaggccgagctgccggtcagc
gatgcggtgaaagcggccctgccagacgaggcgcggaccctgcaccgcctgctcggcagc
cgcggcgacagcccccgtgtgcgccacgatgcggccaatccgctggcgctggacgtgctg
gtggtggacgaggcgtcgatggtcgacctggcgctgatggccaagctggtcgtcgcactg
ccaccgaagacgcggctgatcctgctcggcgacaaggatcagctggccgccgtggaggcc
ggcgcggtgttcgccgaactctgcgaaggccgcggtttcgatgcccgggcggcaagcgag
ctggagcgcatcaccggccagcccgtgccggtcgagacgccgcgctcgcgcctcggcgat
gcggtggtgctgctgacccacagccaccgcttcgccggcgacagcggcatcggcgagttg
gcgcggcggatcaacgccggcgatgcgaaaggcaccgtcgcgctgctgcaggaaggtcgt
gcggatctcgcctggaacgcggcgcccagcccgaccgccttgatcgagcggctggagcag
ggttactcgccctatctgcaggctgcacggcagggcgatccaggcgcggtgttcgaggcc
ttcaacggtttccgggcgctgactgcgcaacgcgagggcccgttcggcgtgaccggcatc
aacgaggcgctggaaacacgcttcaggcgtcgcctcggcgtgccggcccgcgaacgctgg
tatcccgggcgggccgtgatggtccggcagaacgactacgcgctggggctgttcaacggc
gatatcggtctgtgcctgaaaaccgagcagggcctgcgggtgttcttcgagggtgacgac
ggttaccgcggcttcgcgccggcacggctgccgagccacgacagcgccttcgccatgacc
gtgcacaagagccagggctcggagttcgccgaggtactgctggcgctgccggatcaaccg
agcccgctgctgacccgcgcgctgttctacaccggcatcactcgcgccaagcgccaggtg
gagatctgggcgctgccggcacgcctggccgaagcggtcagcacccgcgcagagcgcgcc
gccgggctggccgagcgtctgaatagtgccgcggctgcgggcgaagccgcggcgttgacg
cctcggagcccggcgcaggcgccgccaggtgaccagctcagcctgttctga
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