Stutzerimonas frequens: DM292_20810
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Entry
DM292_20810 CDS
T05921
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psed
Stutzerimonas frequens
Pathway
psed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM292_20810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psed03019
]
DM292_20810
Enzymes [BR:
psed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DM292_20810
Messenger RNA biogenesis [BR:
psed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DM292_20810
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AWT12484
LinkDB
All DBs
Position
complement(4444807..4446624)
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AA seq
605 aa
AA seq
DB search
MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHDSFKIYARDLPLKSAVIFGGVGMN
PQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRVAASHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKGIERMTKQRIPDGDLQGFDASSIEAEKPEVREPRQPRPQRGERKARGERDKPAEKGSE
QKERNRRSKSKARKPARDGAAAQGPVVAGPPQLPPDRAPDEFLDDEVDNFGNRVDYVSPY
QNKQNRGRRSGGQAQPGSAPRAAGAARNGGGGAAGGKGKRSAAGQGQTARNGQPRNGQPR
RKNEGRRIDEPVVTRQEAAKPREKQPVIIHKESKIDRLPSLEQLEQLPSRPRGEKPALLT
RNREA
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttggccggtgccgtcgaggccgccggt
tacacccagcctactcccgtgcaacagcgggccattcccgccgtgttgcaaggccgtgac
ctgatggtcgccgcccagaccggtaccggcaagacaggcggtttcgccctgccggtactc
gaactgctgtttccgggtggtcacccggatcgtgaacatcgctacggcccgaagcagccg
cgcgtgctggtactgacaccgacccgcgaactcgctgcccaggttcacgacagcttcaag
atctacgcccgcgacctgccgctgaaaagcgcggtgatcttcggcggcgtcggcatgaac
ccgcagatccaggccgtcgccaagggcctcgacgtgctggtcgcctgccccggtcgcctg
ctcgacctggccaaccagaaggccatcgacctgtcgcacgtggaaatcctcgtcctcgac
gaagccgaccgcatgctcgacatgggcttcatccatgacgtcaagaaggtcctggccaag
ctgccggccaagcgccagaacctgctgttctcggccaccttctccaaggacattaccgac
ctcgccggcaagctcttgcacaatccggagcgcattgaggtcaccccgccgaacaccacc
gtcgagcgcatcgagcagcgcgtgttccgcgtcgccgccagtcacaagcgcgccctgctc
gcccacctgatcacccagggcgcctgggaacaggtgctggtcttcacccgtaccaagcac
ggcgccaaccgcctggccgagtacctggagaagcatggcctgccggctgccgcgatccac
ggtaacaagagccagaacgcgcgcaccaaggccctggccgacttcaaggccaaccaggtg
cgcattctggtggccaccgatatcgctgcccgcggcctggacatcgatcagctgccgcat
gtggtcaacttcgagctgcccaatgtcgaggaagactatgtgcaccgcatcggccgcacc
ggccgtgccgggcgcagcggtgaagcgatttcgctggtggcgccagacgaggaaaagctg
ctcaagggcatcgagcgcatgaccaagcagcgcattccggatggcgatctgcagggcttc
gacgccagcagcatcgaagccgagaagccggaagtacgtgagccccgccaaccgcgcccg
cagcgtggcgagcgcaaggcacgtggcgaacgcgacaagccggcagaaaagggcagcgag
cagaaggagcgcaaccgccgcagcaagagcaaggcgcgcaagcccgcccgtgatggcgcg
gccgcccagggcccggtcgtcgccgggccgccccagctgccaccggaccgggcgccggac
gagttcctcgatgacgaggtggacaacttcggcaaccgggtggactacgtgagcccctat
cagaacaagcagaaccgcggacgtcgctccggcggccaggcccagccgggctccgcaccg
cgcgccgccggagctgcccgcaatggcggtggcggcgcagcgggcggcaagggcaagcgt
tcagctgcgggccagggccagactgcgcgcaatggccagccacgcaacggtcagccacgg
cgcaagaacgaaggtcgccgtatcgatgaaccggtcgtcacccgccaggaagcggccaag
ccgcgcgagaagcagccggtgatcatccacaaggaatcgaagatcgaccgcctgccaagc
ctggagcagctcgagcagctgccgtctcggccgcgtggcgagaagccggccctgctgacg
cgtaaccgcgaggcctga
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