Pseudonocardia sp. EC080625-04: FRP1_01720
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Entry
FRP1_01720 CDS
T04054
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psee
Pseudonocardia sp. EC080625-04
Pathway
psee03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psee00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FRP1_01720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psee03021
]
FRP1_01720
03400 DNA repair and recombination proteins [BR:
psee03400
]
FRP1_01720
Enzymes [BR:
psee01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FRP1_01720
Transcription machinery [BR:
psee03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FRP1_01720
DNA repair and recombination proteins [BR:
psee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FRP1_01720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ALE72176
LinkDB
All DBs
Position
378861..382370
Genome browser
AA seq
1169 aa
AA seq
DB search
MAVSRAAATTSTLSASANPNYPGAPTRVTFAKISEPLEVPDLLDLQIQSYEWLVGSEAWF
QRRIEAGDDLPVSGLEEILTEISPIEDFSGSMSLSFSDPRFDEVKASVEECRDKDMTYGA
PLFVTAEFTNNTTGEIKSQTVFMGEFPVMTDKGTFIINGTERVVVSQLVRSPGVYFDHSI
DKTTEKDVYSVKIIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTAEQIGER
FGFSETIMTTLEKDNTAGQDEALLDIYRKLRPGEPPTRESAQALLENLFFKDKRYDMAKV
GRYKANKKLGLDIENSVGTLTEEDVATTIEYLVRLHAGETTMSVGSGDSAREIPVETDDI
DHFGNRRLRTVGELIQNQVRVGLSRTERVVRERMTTQDVEAITPQTLINTRPITAAIREF
FGTSQLSQFMDQHNPLAGLTHKRRLSALGPGGLSRERAGMEVRDVHPSHYGRMCPIETPE
GPNIGLIGSLASYARVNPFGFIETPYRKVTEGVVTEQIDYLTADEEDRFVVAQANARLNE
DGSFAEDRVLVRRKGGEVDLISPTGVEYIDVSPRQMVSVATAMIPFLEHDDANRALMGAN
MQRQSVPLLRSESPLVGTGMELRAAVDAGDVVVAEQAGVVEELCADYITVMDDEGQRQTY
RLNKFRRSNQGTCNNQKPIVDEGMRVEVGQVLADGPCTENGEMALGKNLLVAIMPWEGHN
YEDAIILSQRLVQDDVLTSIHIEEHEVDARDTKLGAEEITRDIPNVSEDVLADLDERGII
RIGAEVQPGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGENGKVIGI
RVFSRDDDDELAPGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDG
TPVDIILNTHGVPRRMNIGQILETHLGWIAKTGWEIEGQPEWASRMPEELYSVPADTKTA
TPVFDGAREHEITGLLGSTLPNRDGERMVQPDGKAQLLDGRSGEPYPFPVAVGYMYILKL
AHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKS
DDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDADDE
DLERAAANLGINLSSRPGSESMTVDDVVN
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
ttggctgtctcccgcgccgccgcgaccacctcgaccctctccgcttcggcgaacccgaac
taccccggtgcacccactcgggtcaccttcgcgaagatctccgagccgctggaggtcccg
gacctcctcgacctgcagatccagtcctacgagtggctcgtcggcagcgaggcctggttc
cagcgccggatcgaggccggcgacgacctccccgtgagcggtctcgaggagatcctcacc
gagatctccccgatcgaggacttctccgggtcgatgtcgctgtccttctccgacccccgc
ttcgacgaggtcaaggcctccgtcgaggagtgccgggacaaggacatgacctacggggcc
ccgctgttcgtcacggcggagttcacgaacaacaccaccggtgagatcaagtcccagacc
gtgttcatgggtgagttccccgtgatgacggacaagggcaccttcatcatcaacggcacc
gagcgcgtcgtcgtgtcgcagctcgtccggtcgccgggtgtgtacttcgaccactcgatc
gacaagacgaccgagaaggacgtctactcggtcaagatcatcccgagccggggtgcgtgg
ctggagttcgacgtcgacaagcgcgacaccgtcggtgtccgcatcgaccgcaagcgccgc
cagccggtcaccgtgctgctgaaggcgctgggctggacggccgagcagatcggcgagcgt
ttcgggttctccgagacgatcatgaccacgctggagaaggacaacaccgcgggtcaggac
gaggcgctgctcgacatctaccgcaagctgcgccccggtgagccgccgacgcgcgagagc
gcccaggccctcctggagaacctgttcttcaaggacaagcgctacgacatggccaaggtc
gggcgctacaaggccaacaagaagctcggtctggacatcgagaactcggtcggcacgctg
accgaggaggacgtcgccacgaccatcgagtacctcgtccggctgcacgccggcgagacc
acgatgtcggtgggctccggcgactccgcccgggagatcccggtcgagaccgacgacatc
gaccacttcggcaaccggcgtctgcgtaccgtcggcgagctgatccagaaccaggtgcgg
gtcggtctgtcgcgcaccgagcgggtcgtccgcgagcggatgaccacgcaggacgtcgag
gcgatcacgccgcagaccctgatcaacacccggccgatcacggccgcgatccgggagttc
ttcggcacctcgcagctgtcccagttcatggaccagcacaaccccctcgcgggcctgacc
cacaagcgccgcctgtcggcgctcggcccgggtggtctgtcgcgtgagcgtgcgggcatg
gaggtccgtgacgtccacccgtcgcactacggccggatgtgcccgatcgagaccccggag
gggccgaacatcggtctgatcgggtcgctcgcctcctatgcgcgggtcaacccgttcggc
ttcatcgagaccccgtaccgcaaggtcaccgagggtgtcgtcaccgagcagatcgactac
ctgaccgccgacgaggaggaccgcttcgtcgtcgcccaggcgaacgcccggctgaacgag
gacggctcgttcgccgaggaccgggtcctggtccgccgcaagggcggcgaggtcgacctg
atctcgcccaccggcgtcgagtacatcgacgtctcgccgcgccagatggtgtcggtcgcg
accgcgatgatcccgttcctcgagcacgacgacgcgaaccgcgccctcatgggtgcgaac
atgcagcgtcagtccgtgccgctgctgcgttccgagtcgccgctggtcggcaccggcatg
gagctgcgggccgcggtcgacgccggcgacgtcgtggtggccgagcaggccggtgtggtc
gaggagctgtgcgccgactacatcaccgtcatggacgacgaggggcagcgtcagacctac
cgtctgaacaagttccgccgttcgaaccagggcacctgcaacaaccagaagccgatcgtc
gacgagggcatgcgggtcgaggtgggccaggtgctcgccgacggaccgtgcaccgagaac
ggtgagatggcgctgggcaagaacctcctcgtggcgatcatgccgtgggagggccacaac
tacgaggacgcgatcatcctgtcgcagcgcctcgtccaggacgacgtcctgacctcgatc
cacatcgaggagcacgaggtcgacgcccgtgacaccaagctgggtgccgaggagatcacg
cgggacatcccgaacgtctccgaggacgtgctcgccgacctcgacgagcgcggcatcatc
cggatcggtgccgaggtccagcccggcgacatcctggtcggcaaggtcacgccgaagggc
gagaccgagctgaccccggaggagcgcctgctccgcgcgatcttcggtgagaaggcgcgc
gaggtccgcgacacctcgctgaaggtgccccacggcgagaacggcaaggtcatcggcatc
cgggtcttctcccgcgacgacgacgacgagctggccccgggcgtcaacgagctggtccgg
gtctacgtggcccagaagcgcaagatctccgacggtgacaagctcgccggccgccacggc
aacaagggcgtcatcggcaagatcctcccggccgaggacatgccgttcctcccggacggc
acgccggtcgacatcatcctgaacacccacggtgtgccgcgtcgtatgaacatcggccag
atcctggagacccacctcgggtggatcgccaagaccggctgggagatcgaggggcagccc
gaatgggcgtcccggatgcccgaggagctctactcggtgcccgccgacacgaagaccgcg
acgccggtcttcgacggtgcgcgcgagcacgagatcaccgggctgctcggcagcaccctc
ccgaaccgcgacggtgagcggatggtgcagccggacggcaaggcgcagctgctcgacggg
cgctccggcgagccgtacccgttcccggtcgcggtcggctacatgtacatcctgaagctg
gcgcacctggtggacgacaagatccacgcccggtcgaccggcccgtactcgatgatcacc
cagcagccgctgggaggtaaggcgcagttcggtggtcagcgcttcggtgagatggagtgc
tgggcgatgcaggcgtacggcgcggcctacaccctgcaggagctgctgacgatcaagtcc
gacgacgtcgtgggccgcgtgaaggtctacgaggcgatcgtcaagggcgagaacatcccg
gagccggggatccccgagtcgttcaaggtgctcctcaaggagctgcagtccctctgcctg
aacgtcgaggtgctctccagcgacggcgcggcgatcgagatgcgggacgccgacgacgag
gacctcgagcgtgccgccgcgaacctgggcatcaacctgtccagccgcccgggctcggag
tcgatgaccgtcgacgacgtcgtcaactga
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