Pseudonocardia sp. EC080625-04: FRP1_07405
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Entry
FRP1_07405 CDS
T04054
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
psee
Pseudonocardia sp. EC080625-04
Pathway
psee03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FRP1_07405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psee03400
]
FRP1_07405
Enzymes [BR:
psee01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
FRP1_07405
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
FRP1_07405
DNA repair and recombination proteins [BR:
psee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
FRP1_07405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
DUF6487
NFACT_N
Zn_ribbon_TFIIB
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ALE76096
LinkDB
All DBs
Position
1578916..1579722
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AA seq
268 aa
AA seq
DB search
MPELPEVENARAVLAQATGRTITDVDDGDDWVCRPHRPGDIASALKGGRLTAAHRIGKTM
WCDTETADGDAGPALGVHLGMGGRIVVTNSGGERIGGGPARPDRQSRKREWDRFTVTFDD
GGQFRLFDKRRLGRVRLDPDLSGLGPDAEGLRPAVFRERLLRGRSAVKARLLDQSVLAGV
GNLLADETLWQARIAPATPVRDLTRTDLDRLHRNLDRALERAIANGGVHTGEVIEHRHPG
GHCPRCGAEMVHGTVGGRSTWWCPQEQG
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctgcccgaggtcgagaacgcgcgtgcggtgctggcgcaggcgaccggccgc
acgatcaccgacgtcgacgacggcgacgactgggtgtgccgcccgcaccggcccggcgac
atcgcgtcggccctgaagggcgggcggttgaccgcggcccaccggatcggcaagacgatg
tggtgcgacaccgagaccgccgacggcgacgccgggcccgcgctgggcgtgcacctcggg
atgggcgggcggatcgtcgtcacgaactccggcggcgagcggatcggcggcggcccggcg
cgccccgaccggcagtcgcgcaaacgcgagtgggaccgcttcaccgtcaccttcgacgac
ggcgggcagttccggctgttcgacaagcgccggctgggccgggtccggctcgatcccgac
ctgtccggtctcgggcccgacgccgaggggctgcggcccgcggtgttccgggagcggctg
ctgcgcgggaggtcggcggtgaaggcccggctgctggaccagtcggtgctcgcgggtgtc
gggaacctgctggccgacgagacgctctggcaggcccggatcgccccggcgaccccggtg
cgggacctgacgcgcaccgatctcgaccggctgcaccgcaacctggaccgcgcgctggag
cgggcgatcgcgaacggcggtgtgcacaccggtgaggtgatcgagcaccggcacccgggc
gggcactgtccccgctgcggggcggagatggtgcacgggaccgtcggcggccggtcgacg
tggtggtgcccgcaggaacagggctga
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