Pseudonocardia sp. EC080625-04: FRP1_08625
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Entry
FRP1_08625 CDS
T04054
Name
(GenBank) heavy metal transporter
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psee
Pseudonocardia sp. EC080625-04
Pathway
psee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRP1_08625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psee03019
]
FRP1_08625
03009 Ribosome biogenesis [BR:
psee03009
]
FRP1_08625
Enzymes [BR:
psee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FRP1_08625
Messenger RNA biogenesis [BR:
psee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FRP1_08625
Ribosome biogenesis [BR:
psee03009
]
Prokaryotic type
rRNA helicases
FRP1_08625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
Cas3-like_C_2
MurB_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ALE76136
LinkDB
All DBs
Position
1847511..1849277
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AA seq
588 aa
AA seq
DB search
MEADPTPETPDTPETPAGPTFADLGLAPTLLAALDGLGYETPSPIQAAAIGPLIAGRDLL
GQAATGTGKTAAFALPMLQRLADGRVSRDRGPKPFGIVLAPTRELAMQVGEAVTKYGAEL
GARVACVFGGAPIGPQLGQLRRGVDVVVATPGRAIDLINRGALSLDAIEVAVLDEADEML
DMGFVEDIETILGSTPEGRQTVLFSATMPGRIQSLARTHLSDPADIRIKREATPEGEAPK
VRQTAYHVPRSHVTVALGRVLEMEQPTAAIVFCRTRADVDAVTETLTARGLRAEALHGGM
DQEHRTRVVERLRAGRTELLVATDVAARGLDIDSLTHVVNHDVPSSPESYVHRIGRVGRA
GREGVAITLVTPGSVRHLRNIERLIGGSVPSAPVPSPADLRTVRLARTALALREQIGTDG
DAQPSDGVDELVLDLARDNDLASIAAAAIRIARAGTSVPNDEIEIPEVRSRGGRDRGPAD
RGPRRDRDGRPGAGRGQGARPPKAGTTRLFVSAGRASGIRPQDIVGALANESRLSGRDIG
AIQIHERHALVEVPEHAADDVLRSLRGATTLKGRKANVRRDRDGAAAG
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atcgaggcggacccgacccccgagacgcccgacacccccgagacccccgccggcccgacc
ttcgcggacctgggcctcgccccgacgctgctggccgcactggacgggctgggctacgag
accccgagcccgatccaggccgccgcgatcggcccgctcatcgccggccgcgacctgctc
gggcaggccgccaccggcaccggcaagaccgccgcgttcgcgctgccgatgctgcagcgg
ctcgccgacggccgcgtctcccgcgaccgcggcccgaagcccttcggcatcgtgctcgcc
ccgacccgtgagctggccatgcaggtcggcgaggccgtcaccaagtacggcgccgagctc
ggcgcgcgcgtcgcctgcgtgttcggtggtgcgccgatcggcccgcagctgggccagctg
cgccgcggcgtcgacgtcgtcgtcgccacccccggccgcgccatcgacctgatcaaccgc
ggtgcgctgtcgctggacgcgatcgaggtcgccgtcctggacgaggccgacgagatgctc
gacatgggcttcgtcgaggacatcgagaccatcctcggctcgacccccgagggccggcag
acggtgctgttctcggcgaccatgccgggccgcatccagagcctggcgcgcacgcacctg
agcgacccggccgacatccgcatcaagcgggaggcgacgccggagggtgaggccccgaag
gtccgccagaccgcgtaccacgtgccgcgcagccacgtgaccgtcgcgctgggccgggtg
ctcgagatggagcagccgaccgcggcgatcgtgttctgccgcacccgcgccgacgtcgac
gccgtcaccgagaccctcaccgcgcgcggcctgcgcgcggaggcgctgcacggcggcatg
gaccaggagcaccggacccgcgtcgtcgagcgactgcgtgccgggcggaccgagctgctg
gtcgcgaccgacgtcgcggcccgcggtctcgacatcgactcgctgacccacgtggtcaac
cacgacgtcccgtcgtcgccggagtcctacgtgcaccggatcggccgggtcggccgcgcc
gggcgcgagggcgtcgcgatcaccctggtgaccccggggtcggtgcggcacctgcgcaac
atcgagcggctgatcggcggctcggtgcccagcgcgccggtgccgtcccccgcggacctg
cgcaccgtgcggctggcccgcaccgcgctggccctgcgcgagcagatcggcaccgacggc
gacgcacagccgtccgacggggtcgacgagctggtgctcgacctggcccgcgacaacgac
ctcgcctcgatcgccgccgccgcgatccgcatcgcccgggccggcacctcggtcccgaac
gacgagatcgagatccccgaggtccgctcgcgcggcggccgcgaccgcggtccggccgac
cgtggcccgcgccgcgaccgtgacggccgtccgggcgccgggcgcggccagggcgcccgt
ccgccgaaggcgggcaccacccggctgttcgtctccgccggccgggcgtcgggcatccgt
ccgcaggacatcgtgggcgcgctggcgaacgagtcccggctgtccggccgcgacatcggt
gccatccagatccacgagcggcacgcgctggtcgaggtcccggagcacgccgccgacgac
gtgctgcgctcgctgcgtggcgcgaccacgctgaagggccgcaaggccaacgtccgtcgt
gaccgggacggtgcggccgccggctga
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