Pseudonocardia sp. EC080625-04: FRP1_13880
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Entry
FRP1_13880 CDS
T04054
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
psee
Pseudonocardia sp. EC080625-04
Pathway
psee03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FRP1_13880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psee03400
]
FRP1_13880
DNA repair and recombination proteins [BR:
psee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FRP1_13880
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FRP1_13880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
AAA_29
SMC_N
AAA_21
AAA_16
RsgA_GTPase
AAA_25
AAA_23
nSTAND1
AAA_22
APS_kinase
nSTAND3
Viral_helicase1
DnaJ_CXXCXGXG
NACHT
cobW
ScfRs
MMR_HSR1
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ALE76301
LinkDB
All DBs
Position
complement(3002749..3005733)
Genome browser
AA seq
994 aa
AA seq
DB search
MVVRGAREHNLQGVDIDLPRDSMIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSAYARQ
FLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEIHDYLRLLYARAGIPHCPQC
GERIAKQTPQQIVDQVLEMEQGSRFQVLAPVVRTRKGEFVDLFSTLQSQGYSRGLVDGTV
HQLADPPKLKKQEKHDISVVVDRLSVKATAKQRLTDSVETALRLADGLVVLDFVDLPDDD
AGRERRFSEKMACPNGHTLAVDDLEPRTFSFNSPYGACPACAGLGIKKEVDPELVVPDPD
LSLGDGAIAPWSAGHNAEYFGRLLSGLSTAIGFRMDTPWRKLPAAAQKAVLNGSDDQVHV
RYRNRYGRERSYYANFEGVMPFLERRLEQTESESQRERYEGYMRDIPCPACGGARLRPEV
LSVTMPHRDLGERSIAQVSNMSVAECSHFLQGMVLDERQTVIAGAVLKEIQARLGFLLDV
GLEYLSLDRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIDTLTR
LKDLGNTLIVVEHDEDTIRACDWAVDIGPGAGEHGGHIVHSGPVAELESHDTSLTGAYLS
GRKTIPLPQRRELDHDRKLTVVGAREHNLRGIDVDVPLGGLVSITGVSGSGKSTLINDIL
ATVLANKLNGARQVPGRHTRITGVDQVDKLVRVDQSPIGRTPRSNPATYTGVWDKVRKLF
AATTEAKVRGYAEGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCKGARYNRET
LEVHYKGKTVADVLDMPIEEAAEFFEPITSISRYLRTLVDVGLGYVRLGQPAPTLSGGEA
QRVKLASELQKRSNGRTVYILDEPTTGLHFEDIRKLLAVIQGLADKGNTVIVIEHNLDVI
KTSDWVIDMGPEGGSGGGTVVAQGTPEQVAAEQASHTGRFLRDLVTPDDSPAPRRRRTAR
SRTADASSNGATGSGSSNGSAPATRRRSRATAAS
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
ctggtcgtgcgcggcgcgcgcgagcacaacctgcagggcgtcgacatcgacctgccccgc
gacagcatgatcgtgttcaccgggctgtccgggtcgggcaagtcgagcctcgcgttcgac
acgatcttcgccgagggtcagcgccggtacgtcgagtcgctgtcggcctacgcccgccag
ttcctcgggcagatggacaagcccgacgtcgacttcatcgagggcctctcgccggcggtc
tcgatcgaccagaagtcgaccaaccgcaacccgcggtcgacggtcggcacgatcaccgag
atccacgactacctgcgcctgctctacgcgcgggccgggatcccgcactgcccgcagtgc
ggcgagcggatcgcgaagcagacgccgcagcagatcgtggaccaggtcctcgagatggag
cagggcagccgcttccaggtgctcgccccggtcgtccggacccgcaagggcgagttcgtc
gacctgttctccaccctgcagtcgcagggctactcccgggggctcgtcgacggcaccgtg
caccagctcgcggacccgccgaagctgaagaagcaggagaagcacgacatctccgtcgtc
gtcgaccggctgtcggtcaaggcgaccgccaagcagcggctcaccgactcggtggagacg
gcgctgcggctggcggacgggctcgtcgtgctggacttcgtcgacctccccgacgacgac
gccggccgcgagcgccggttctccgagaagatggcctgcccgaacgggcacaccctcgcc
gtcgacgacctcgagccccggaccttctccttcaactcgccctacggcgcctgcccggcc
tgcgcgggcctgggcatcaagaaggaggtcgacccggagctggtcgtccccgacccggac
ctgtcgctcggcgacggcgcgatcgcgccctggtccgccgggcacaacgccgagtacttc
ggccggctgctgtcggggttgtcgacggccatcggtttccggatggacaccccgtggcgc
aagctgccggccgccgcgcagaaggcggtgctgaacgggagcgacgaccaggtccacgtc
cgctaccgcaaccggtacggccgggagcggtcgtactacgcgaacttcgagggcgtcatg
ccgttcctcgagcgtcgcctggagcagaccgagtcggagtcgcagcgcgagcgctacgag
ggctacatgcgcgacatcccgtgcccggcctgcggcggcgcgcgactgcggcccgaggtc
ctgtcggtcaccatgccgcaccgtgacctgggggagcggtcgatcgcccaggtctcgaac
atgtcggtcgccgagtgctcgcacttcctgcagggcatggtgctcgacgagcgccagacc
gtgatcgccggtgcggtgctcaaggagatccaggccaggctcggcttcctgctcgacgtc
gggctggagtacctgtcgctggaccgggccgccggcacgctgtccggcggcgaggcgcag
cgcatccggctggccacccagatcggttccggcctggtcggcgtgctctacgtgctcgac
gagccgtcgatcggcctgcaccagcgcgacaaccggcggctgatcgacaccctgacccgg
ctgaaggacctcgggaacacgctgatcgtcgtcgagcacgacgaggacaccatccgggcc
tgcgactgggcggtggacatcggcccgggggccggtgagcacggtgggcacatcgtgcac
tccgggccggtcgcggagctggagtcgcacgacacctccctgacgggggcgtacctgtcc
gggcggaagacgatcccgctgccgcagcgccgcgagctggaccacgaccggaagctgacc
gtcgtcggcgcgcgggagcacaacctgcgcgggatcgacgtcgacgtcccgctcggtggc
ctcgtctccatcaccggcgtctccggctccgggaagtccacgctgatcaacgacatcctg
gccacggtcctggcgaacaagctcaacggcgcccggcaggtcccgggccggcacacccgg
atcacgggcgtcgaccaggtcgacaagctggtgcgggtcgaccagtcgccgatcgggcgg
accccgcgctccaacccggcgacctacaccggggtctgggacaaggtccgcaagctgttc
gccgcgaccaccgaggcgaaggtgcgcggctacgccgagggccggttctccttcaacgtc
aagggcggccgctgcgaggcgtgcaccggcgacggcacgatcaagatcgagatgaacttc
ctcccggacgtctacgtcccgtgcgaggtctgcaagggcgcccggtacaaccgggagacg
ctcgaggtgcactacaagggcaagaccgtggccgacgtgctcgacatgccgatcgaggag
gccgcggagttcttcgagccgatcacctcgatcagccgctacctgcggaccctggtcgac
gtcggcctcggctacgtccgtctcgggcagcccgctcccacgctgtccgggggtgaggca
cagcgggtcaagctggcctccgagctgcagaagcgcagcaacggccggaccgtctacatc
ctcgacgagccgaccacgggcctgcacttcgaggacatccgcaagctgctcgcggtgatc
caggggctcgccgacaagggcaacacggtgatcgtgatcgagcacaacctcgacgtcatc
aagacgtcggactgggtcatcgacatgggtccggagggcggatccggtggtggcacggtc
gtcgcacaggggacacccgagcaggtggcggccgagcaggcgagccacacgggccggttc
ctgcgcgacctggtgacaccggacgacagcccggcgccacgtcgtcgccgcacggcccgc
agccgtacggccgacgcctcgtcgaacggcgccaccgggagcgggagctcgaacggctcg
gccccggcgacccggcggcgcagccgggcgaccgcggcgtcctga
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