Pseudonocardia sp. EC080625-04: FRP1_18705
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Entry
FRP1_18705 CDS
T04054
Name
(GenBank) RNA polymerase sigma70
KO
K02405
RNA polymerase sigma factor FliA
Organism
psee
Pseudonocardia sp. EC080625-04
Pathway
psee02020
Two-component system
psee02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psee00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FRP1_18705
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FRP1_18705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psee03021
]
FRP1_18705
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
psee02035
]
FRP1_18705
Transcription machinery [BR:
psee03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FRP1_18705
Bacterial motility proteins [BR:
psee02035
]
Flagellar system
Flagellar assembly proteins
Stator
FRP1_18705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
KORA
HTH_23
UPF0122
Motif
Other DBs
NCBI-ProteinID:
ALE76478
LinkDB
All DBs
Position
complement(4040894..4041643)
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AA seq
249 aa
AA seq
DB search
METVEPEALPLWRAHLAVRSADTRRLLVEHHAPLVRGIGAKLATRLPSSIELADLLQSGT
FGLIDAVDRFDPARGVRFEGYAAQRVRGAMLDELRAQDWVPRTVRSRSREIERAREAVQS
KVGRPASDRELAAELGIGLRDLRQAVRPALLVSADDLDGNAAPGPAALAAADTADPVATA
VRRETGAELRAAIAQLGERDRTVLRLYYVEDHTLAEIGALLGVTESRVCQLHTRMLTRLR
TRMEPALAG
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atcgagaccgtcgagccggaggcgctgccgctgtggcgcgcccacctggccgtgcggagc
gccgacacccgccggctcctggtcgagcaccacgcccccctcgtccgcgggatcggggcg
aagctggcgacccggctgccgtcgtcgatcgagctggcggacctcctgcagtcggggacc
ttcgggctgatcgacgccgtggaccggttcgacccggcacgcggggtgcggttcgagggg
tacgcggcgcagcgggtccgtggcgcgatgctcgacgagctgcgcgcccaggactgggtg
ccgcgcaccgtgcgctcccggagccgggagatcgagcgcgcccgcgaggccgtccagagc
aaggtcggccggcccgcctccgaccgggagctggcggccgagctcgggatcggcctgcgc
gatctccggcaggcggtgcggccggcgctgctcgtcagcgccgacgacctcgacgggaac
gccgcacccggcccggccgccctcgccgccgccgacaccgccgacccggtcgccaccgcc
gtccgccgcgagaccggtgccgagctgcgcgccgcgatcgcccagctcggtgagcgcgac
cgcacggtgctccgcctgtactacgtcgaggaccacaccctcgccgagatcggcgcgctg
ttgggggtcacggagtcccgggtctgccagctgcacacacggatgctcacgcggctgcgc
acccggatggagcccgccctcgcgggatga
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