Pseudonocardia sp. EC080625-04: FRP1_18905
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Entry
FRP1_18905 CDS
T04054
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
psee
Pseudonocardia sp. EC080625-04
Pathway
psee03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FRP1_18905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psee03400
]
FRP1_18905
Enzymes [BR:
psee01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
FRP1_18905
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
FRP1_18905
DNA repair and recombination proteins [BR:
psee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
FRP1_18905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
DUF7560
HpcH_HpaI
Zn_ribbon_3
DZR
zf-C2HC_3
Zn_Ribbon_TF
IBR_1
Motif
Other DBs
NCBI-ProteinID:
ALE74527
LinkDB
All DBs
Position
complement(4083632..4084513)
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AA seq
293 aa
AA seq
DB search
MPELPEVEVVRRGLADHVLDRRVAAVEVLHPRAVRRHPTGSADFTARLTGRTLRAAARRG
KYLWLELDTAEAGDDALLAHLGMSGQMLVENPAEPDEKHLRVRLRFDDDGPELRFVDQRT
FGGLSVHPLAPASGGGLLPEPVAHIARDPMDPAFSADDTVAALRRRRTEVKRALLDQTVV
SGIGNIYADEALWRARLHGLRPTEKLTRAQGHAVLDAATTVMTAALAQGGTSFDALYVNV
NGASGYFDRSLNVYGQVDRACPRCGTPIRRDAFMNRSSFTCPRCQPRPRTPRT
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctccccgaggtcgaggtcgtccgccggggcctcgccgaccacgtcctggac
cgccgggtcgccgccgtcgaggtgctgcacccgcgggccgtccggcggcatcccaccggc
tcggcggacttcaccgcccggctgaccgggcggacgctgcgtgcggccgcccgccgtggc
aagtacctgtggctcgaactcgacacggccgaggccggggacgacgcgctcctcgcgcac
ctcgggatgtccggccagatgctcgtcgaaaatccggccgagcccgacgagaagcacctg
cgggtccgcctccgcttcgacgacgacggtcccgagctgcgcttcgtcgaccagcgcacg
ttcggcgggctgtcggtccatccgctcgccccggcgtccggcgggggcctgctgcccgag
ccggtcgcgcacatcgcgcgcgacccgatggacccggccttctccgccgacgacaccgtc
gccgcgctgcgccgcaggcggaccgaggtcaagcgggcgctgctggaccagaccgtggtc
tcgggcatcggcaacatctacgccgacgaggccctctggcgggcgagactgcacggcctg
cggcccaccgagaagctcacccgggcgcaggggcacgccgtgctcgacgcggccaccacc
gtcatgaccgcggcgctcgcccagggcgggacctcgttcgacgcgctgtacgtcaacgtc
aacggggcgtcggggtacttcgaccggtccctgaacgtctacggacaggtggaccgggcc
tgcccgcgctgcggcacgccgatccggcgggacgcgttcatgaaccgctcgtccttcacc
tgcccgcgctgccagccgagaccccgcacgccgcgcacctga
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