Pseudonocardia sp. EC080625-04: FRP1_21575
Help
Entry
FRP1_21575 CDS
T04054
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psee
Pseudonocardia sp. EC080625-04
Pathway
psee03420
Nucleotide excision repair
psee03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FRP1_21575
03430 Mismatch repair
FRP1_21575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psee03400
]
FRP1_21575
Enzymes [BR:
psee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FRP1_21575
DNA repair and recombination proteins [BR:
psee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FRP1_21575
MMR (mismatch excision repair)
Other MMR factors
FRP1_21575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ALE74878
LinkDB
All DBs
Position
complement(4668867..4672235)
Genome browser
AA seq
1122 aa
AA seq
DB search
MDPTPVELATALGLHPPTAEQAAVIAAPAGPALVVAGAGAGKTETMAARVVWLVATGRVL
PEQVLGLTFTRKAAQQLGTRVRSRLRRLAGSRMLDDLDPTGARRAALLAGEPTVSTYHAY
AGRLVGEHALRLPAEPANRLLGPTATWQLAHRVVSTWAADLEIDRVPATVTGYLLSLAGE
LGEHLVEPADVERLTARMLPVLEHAPPGKRQRAEPSAGYKARIAGQRMRLELLPLIEEFA
RRKQAEQAMDFSDQMALAARIAEADPEVGRIERGQYRAVLLDEYQDTGHAQRVLLRALFG
VPPGLAPEPEEPEHRSVTAVGDPCQSIYGWRGASAGNLARFRTDFPTPSGGPAPVHGLLT
SFRNPAEVLALANRVSEPLRTAPGAVRVGELRPLDGAGPGDVRAALLPDVAAEIAWAADG
IASRWHAGADEGEPPTAAVLVRRRSDMDALAAALRDRRVPVEVVGLGGLLSTPEVRDLVS
ALRVVTDPLAGPSAVRLLTGPRWRLGIADLAALWQRARELVPSRPARPGPLGPEELALGA
LPGDEAEQAGLADALDDPGEPDRYSQAGFDRIRRIGRELSHLRARAAAPLTDLVADVERT
LLLDVETMARPGPTGRAHLDAFADVVADFAAGADVPSLPALLDYLDTAEQAEEGLTPGEV
EVSPDRVQILTVHAAKGLEWEIVAVPHLVAQVFPGRKMSGSWLKDPSDLPVPLRGDADDL
PGLDLPPPGADRKQVEQALDDHDDALDERRLAEERRLFYVALTRAERTLLVSGHRWPATG
ERPKDPSVFLTELAEILEGPGGSEVGALEVWAPPPEADTGNPALGVERTAQWPPDPFGDR
ADDVRAGADLVRAELRARAPRRPRRSRRSSTDQLALELPEPGPAEPAPDVPDAEGDPEGW
AADVDVLLAERAAAKERPTVALPGRLSVSRLIELADDPDALAVRLRRPVPLPPNPHARRG
TAFHAWLEQRFGAERLLDIDELPGAADESVTSESDAAELAELQAAFEASEWADRKPVDVE
VSFETVLAGVAVRGRMDAVFADPDGGWTVVDWKTGGPAAPEREHAVAVQLAAYRLAWAAL
QEVPAERVRAAFHYVRDGVTLRPADLLDADGLRALVAGVPAG
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atggaccccaccccggtcgagctcgccacggcgctcggcctgcacccgccgaccgcggag
caggccgcggtgatcgccgccccggccgggccggcactcgtcgtcgccggggcgggcgcc
ggcaagacggagacgatggcggcccgggtggtctggctcgtcgcgaccggacgggtgctg
cccgagcaggtcctcggcctcaccttcacccgcaaggcggcccagcagctcggcacccgc
gtccggtcccggctccgccggctcgccgggtcccgcatgctcgacgacctcgaccccacc
ggcgcccgcagggccgcgctgctcgcgggcgagcccaccgtctccacctaccacgcctac
gccgggcggctggtcggcgagcacgcgctgcggctgcccgccgagccggcgaaccggctg
ctcggcccgaccgcgacctggcagctcgcgcaccgggtcgtctccacctgggcggccgac
ctggagatcgaccgggtcccggcgaccgtgaccgggtacctgctctcgctggccggtgag
ctgggggagcacctcgtcgaaccggccgacgtcgagcggctcaccgcccggatgctgccg
gtgctggagcacgccccgccgggcaagcggcagcgcgcggagccgtcggcggggtacaag
gcccggatcgccgggcagcggatgcggctggagctgctgccgctgatcgaggagttcgcc
cgccgcaagcaggccgaacaggcgatggacttctccgaccagatggcgctcgccgcgcgc
atcgccgaggccgacccggaggtcgggcggatcgagcgcggtcagtaccgggccgtgctg
ctcgacgagtaccaggacaccgggcacgcccagcgggtgctgctgcgggcgctgttcggt
gtcccgccgggactcgccccggagccggaggagcccgagcaccggtcggtgaccgccgtc
ggtgacccctgccagtcgatctacggctggcgcggcgcgagcgccgggaacctggcccgg
ttccgcaccgacttcccgacgccgtccggtggccctgctcccgtgcacgggctgctcacc
agcttccgcaatccggccgaggtgctcgcgctcgcgaaccgggtgtccgagccgctgcgc
accgcgcccggcgccgtccgcgtcggtgagctccgcccgctcgacggcgccggtcccggc
gacgtccgggccgcgttgttgcccgacgtcgccgccgagatcgcctgggcggccgacggc
atcgcgtcccgctggcacgccggcgccgacgagggcgagccgcccaccgccgcggtgctg
gtccgccgccgctccgacatggacgcgctcgccgccgcgctgcgcgaccgtcgggtcccg
gtcgaggtcgtcgggctcggcgggttgctgtcgacccccgaggtccgtgacctggtgtca
gcgctgcgggtggtgaccgacccgctggccgggccctcggcggtacggctgctgaccggg
ccccgctggcggctcggcatcgccgacctcgccgcgctgtggcagcgggcccgcgagctc
gtcccgtcccggccggcccgccccggcccgctcggacccgaggagctggccctgggggcg
ctccccggtgacgaggccgagcaggccgggctcgccgacgccctcgacgacccgggcgag
ccggaccgctactcccaggccgggttcgaccggatccgccggatcggccgcgagctgtcc
cacctgcgggcccgcgccgcggccccgctgaccgacctcgtcgccgacgtcgagcggacc
ctgctgctcgacgtcgagacgatggcccgccccggcccgaccggccgggcacacctggac
gcgttcgccgacgtcgtcgccgacttcgccgccggtgccgacgtgccgtcgctgcccgcg
ctgctcgactacctcgacacggcggagcaggccgaggagggcctgaccccgggtgaggtc
gaggtctccccggaccgggtgcagatcctcaccgtgcacgcggcgaaggggctggagtgg
gagatcgtcgccgtcccgcacctggtggcgcaggtcttcccgggccgcaagatgtccggc
agctggctgaaggacccgtccgacctgccggtcccgctgcgcggcgacgccgacgacctc
cccggtctcgacctcccgccgcccggcgcggaccgcaagcaggtcgagcaggccctcgac
gaccacgacgacgccctcgacgagcgccgcctcgccgaggagcgccggctgttctacgtc
gcgctcacccgtgccgagcgcaccctgctcgtctccgggcaccggtggccggcgaccggg
gagcgcccgaaggacccgtcggtgttcctcaccgagctcgccgagatcctggaggggccc
ggtggctccgaggtcggcgcgctggaggtgtgggcgccgccgccggaggccgacaccggg
aacccggcgctcggcgtggagcgcaccgcgcagtggccgccggacccgttcggcgaccgg
gcggacgacgtgcgggccggtgccgacctggtccgggcggagttgcgggcccgggcaccg
cgacggccgcggcggtcccggcggtcgtccaccgaccagctcgcgctggagctgcccgag
cccggcccggcggaaccggccccggacgtacccgacgcggagggtgacccggagggctgg
gccgccgacgtcgacgtcctgctcgccgagcgggccgccgccaaggagcgccccaccgtc
gcgctgccggggcggctgtcggtgagccggctgatcgagctcgccgacgatccggacgcg
ctcgccgtgcggctgcgccgcccggtgccgctgccgccgaacccgcacgcgcgacgcggg
accgcgttccacgcctggctggagcagcggttcggtgcggaacggctgctcgacatcgac
gagctgcccggcgccgccgacgagtccgtcacctcggagtccgacgccgcggagctggcg
gagctgcaggccgcgttcgaggcgtcggagtgggcggaccgcaagccggtcgacgtcgag
gtgtcgttcgagaccgtcctcgccggggtcgccgtgcgtgggcggatggacgccgtcttc
gccgatcccgacggcggctggaccgtcgtcgactggaagaccggtgggccggccgccccg
gagcgggagcacgccgtcgcggtgcagctggcggcgtaccggctggcctgggcggcgctg
caggaggtcccggccgagcgggtgcgggccgcgttccactacgtccgcgacggcgtcacc
ctgcggccggcggacctgctggacgccgacgggctgcgggcgctggtggcgggtgtgccg
gcgggctga
DBGET
integrated database retrieval system
