Pseudonocardia sp. EC080625-04: FRP1_22630
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Entry
FRP1_22630 CDS
T04054
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psee
Pseudonocardia sp. EC080625-04
Pathway
psee03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FRP1_22630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psee03400
]
FRP1_22630
Enzymes [BR:
psee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FRP1_22630
DNA repair and recombination proteins [BR:
psee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FRP1_22630
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ALE76590
LinkDB
All DBs
Position
complement(4884539..4888165)
Genome browser
AA seq
1208 aa
AA seq
DB search
MSGLLTSALSDTGLRAAVDAARAADTRTAETPAVSVEGPAALRPLLVSGLAEDGCVLAVT
ATDREAEDLAAAVSDLLGHGEALDAAADTVHDSAGAPVVVLPSWETLPHEKLSPRPDTVA
RRLTIFHRLASPATAPRVVVTAARSLIQPVAPGLGALAPVSLAVGEEHEFEQLLERLVEL
AYTRAEMVTTRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRAFSVADQRSVGEVGR
VEVPPCRELLLTGPVRQRAAELAAEQPETAGLNRNPLRELLEKLSEGIPGEGMESLIPAL
VGGEMQLLSDLLPAGSRVLLADPERIRTRCADLVRTGQEFLEASWLATGSGGEAPIDVSG
SAYRDLTTTLAQSTATGRPVVSLSPLLSGADDVVVPAVHEIEPYRGDTDRAITDLRAHVA
TGGAAVLVLAGQGTADRSLEQLRDAEVPASKVDTLPDAPEKGVVTVTCGRVLNGFTATEV
GLVLISEADLTGSRAGLDAAPRKTTPRRRNAVDLAVLQPGDYVVHNQHGIGRFVEMKERT
VQGATREYLVLEYASSKRGQPADRLFVPTDALDEISRYVGGEQPSVNKLGGADWAKTKGR
ARKAVKDIAAGLVQLYAARQASPGHAFGADTPWQRELEDAFPYTETPDQLSAIDEVKKDM
ERPVPMDRVISGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLATQHLNTFAERMRQF
PVTVRGLSRFTDAAEAKETIDKLAEGTVDVVVGTHRLLQGAVRWKDLGLVVVDEEQRFGV
EHKEHITALRAHVDVLTLSATPIPRTLEMSLAGIREMSAITTPPEDRHPTLTYVGAYDDK
QVAAAVRRELLRDGQVFYVHNRVSSIDKAAKNIQDLVPEARVAVAHGQMNEELLERTVNA
FWHREFDVLVCTTIVENGLDISNANTLIVERSDTLGLSQLHQLRGRVGRGRERGYAYFLF
PPEHPLTETAHDRLATIAQHSELGSGAAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYI
RLVGEAVAAFRKQAGGETGASVEDEQLVEVRVDLPVDAHVPHDYVDGERLRLEVYRKIAE
APDDAALSAIVEELTDRYGEPPTPVRNLLEVARFRQLCRRLGVREVASAGTQLRIGPLQL
PDSAQLRLRRLYPKAQYKAAAQIVTVPKPVQGGRIGGSPVRDVELLGWCAELLLQIVPSS
TPVHSSSG
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
ctgtccggtctgctcacctcagcactgtccgacaccggcctgcgggccgcggtcgacgcc
gcccgtgccgcggacacccgtaccgccgagaccccggcggtgagcgtcgagggtccggcc
gcgctccgcccgctgctcgtctccggcctcgccgaggacggctgcgtcctggccgtgacc
gccaccgaccgggaggccgaggacctggcggccgccgtgtccgacctgctcgggcacggc
gaggcgctggacgcggccgccgacaccgtgcacgacagtgccggcgcgcccgtcgtcgtg
ctgccgtcctgggagacgctgccgcacgagaagctgtcgccccgcccggacaccgtcgcc
cgccggctgacgatcttccaccggctcgcctcgccggcgaccgcaccgcgggtcgtcgtc
acggcggcacggagcctgatccagccggtcgcgcccgggctgggcgcgctggcgccggtc
tccctcgcggtcggcgaggagcacgagttcgagcagctgctggagcgcctggtcgagctc
gcctacacccgcgccgagatggtgacgacccgcggtgagttcgcggtgcgcggcggcatc
ctcgacgtcttcccgccgaccgccgagcacccggtacgcgtcgagttctggggcgacgag
gtgtcggagatgcgcgcgttctcggtcgccgaccagcgttcggtcggcgaggtcggtcgg
gtcgaggtgccgccgtgccgggagctgctgctgaccgggccggtccggcagcgcgccgcc
gagctggccgccgagcagcccgagaccgcgggcctgaaccgcaacccgctgcgcgagctg
ctggagaagctgtccgagggcatccccggcgagggcatggagtcgctgatcccggccctc
gtgggcggcgagatgcagctgctgtccgacctgctgcccgccgggtcccgcgtgctgctc
gccgacccggagcggatccgcacccgctgcgcggacctggtccggaccgggcaggagttc
ctggaggcgtcctggctggcgaccgggtcgggcggcgaggccccgatcgacgtctccgga
tcggcctaccgcgacctcaccacgaccctcgcgcagtccaccgcgaccggacgcccggtg
gtctcgctgtccccgctgctgtccggtgccgacgacgtcgtcgtcccggccgtgcacgag
atcgagccctaccgcggcgacaccgaccgcgcgatcaccgacctgcgcgcgcacgtcgcc
accggtggcgcggccgtgctggtgctggccgggcagggcaccgcggaccgctccctggag
cagctgcgcgacgccgaggtcccggcgtccaaggtggacaccctgccggacgccccggag
aagggcgtcgtcaccgtcacctgcggccgggtgctcaacggcttcaccgccaccgaggtc
gggctcgtcctgatctccgaggccgacctcaccggcagcagggccgggctcgacgccgcc
ccgcgcaagaccaccccgcgccgccgcaacgccgtcgacctggcggtgctgcagcccggc
gactacgtcgtccacaaccagcacggcatcgggcgcttcgtcgagatgaaggagcgcacc
gtccagggcgccacccgcgagtacctggtgctggagtacgccagctccaagcgcgggcag
cccgccgaccggctgttcgtcccgaccgacgcgctcgacgagatcagccgctacgtcggc
ggcgagcagccctcggtcaacaagctcggcggcgcggactgggcgaagaccaagggtcgc
gcccgcaaggcggtcaaggacatcgcggccgggctggtccagctctacgcggcgcggcag
gcgtccccggggcacgccttcggcgccgacaccccgtggcagcgcgagctcgaggacgcc
ttcccctacaccgagacccccgaccagctctcggcgatcgacgaggtcaagaaggacatg
gagcggccggtcccgatggaccgggtgatctccggcgacgtcggtttcggcaagaccgag
atcgccgtccgggccgcgttcaaggcggtccaggacggcaagcaggtcgccgtcctggtg
cccacgacgctgctggcgacccagcacctcaacaccttcgccgagcggatgcgccagttc
ccggtgacggtccgcgggctgtcccgcttcaccgacgccgccgaggcgaaggagacgatc
gacaagctggccgagggcaccgtcgacgtcgtcgtcgggacccaccggctgctgcagggc
gcggtccgctggaaggacctcggcctcgtggtcgtcgacgaggagcagcggttcggcgtc
gagcacaaggagcacatcaccgcgctgcgggcgcacgtggacgtcctcacgctgtccgcg
acgccgatcccgcggaccctggagatgagcctcgccggcatccgggagatgtcggcgatc
acgaccccgcccgaggaccggcacccgaccctgacctacgtcggcgcctacgacgacaag
caggtcgccgccgccgtccgccgcgagctgctgcgcgacggccaggtgttctacgtgcac
aaccgggtcagctcgatcgacaaggcggccaagaacatccaggacctcgtcccggaggcc
cgggtcgcggtcgcgcacggccagatgaacgaggagctgctggagcgcacggtcaacgcg
ttctggcaccgcgagttcgacgtgctggtgtgcacgacgatcgtcgagaacggcctggac
atctccaacgccaacacgctgatcgtcgagcgctccgacacgctcgggctctcccagctg
caccagctgcgcggccgggtcggccggggccgggagcggggctacgcctacttcctgttc
ccgcccgagcacccgctcaccgagaccgcgcacgaccggctcgccaccatcgcccagcac
tccgagctgggctccggtgccgccgtcgccatgaaggacctggagatccgcggcgcgggc
aacatcctgggtgccgagcagtccgggcacatcgcgggcgtcgggttcgacctctacatc
cggctggtcggggaggccgtcgcggcgttccgcaagcaggcgggcggggagaccggggcg
tcggtcgaggacgagcagctcgtcgaggtgcgggtggacctgccggtcgacgcgcacgtc
ccgcacgactacgtcgacggcgagcgcctgcgcctggaggtctaccgcaagatcgccgag
gcgcccgacgacgcggcgctgtccgcgatcgtcgaggagctgaccgaccgctacggcgag
ccgcccaccccggtgcggaacctgctggaggtggcccggttccggcagctctgccgtcgc
ctgggcgtccgcgaggtcgcctcggccggcacccagctgcggatcggcccgctgcagctg
ccggactccgcgcagctcaggctccggcggctgtacccgaaggcgcagtacaaggcggcc
gcgcagatcgtcaccgtgccgaagccggtgcagggcgggcggatcggcggatcgccggtg
cgcgacgtcgagctgctcggctggtgcgcggagctgctgctgcagatcgtgccgtcgtcg
accccggtgcacagctcgtcgggctga
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integrated database retrieval system
