KEGG   Pseudodesulfovibrio sediminis: PSDVSF_00250
Entry
PSDVSF_00250      CDS       T08380                                 
Symbol
lpdA
Name
(GenBank) 2-oxoglutarate dehydrogenase E3
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
psef  Pseudodesulfovibrio sediminis
Pathway
psef00010  Glycolysis / Gluconeogenesis
psef00020  Citrate cycle (TCA cycle)
psef00260  Glycine, serine and threonine metabolism
psef00280  Valine, leucine and isoleucine degradation
psef00310  Lysine degradation
psef00380  Tryptophan metabolism
psef00620  Pyruvate metabolism
psef00630  Glyoxylate and dicarboxylate metabolism
psef00640  Propanoate metabolism
psef00670  One carbon pool by folate
psef00785  Lipoic acid metabolism
psef01100  Metabolic pathways
psef01110  Biosynthesis of secondary metabolites
psef01120  Microbial metabolism in diverse environments
psef01200  Carbon metabolism
psef01210  2-Oxocarboxylic acid metabolism
psef01240  Biosynthesis of cofactors
Module
psef_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
psef_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:psef00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    PSDVSF_00250 (lpdA)
   00020 Citrate cycle (TCA cycle)
    PSDVSF_00250 (lpdA)
   00620 Pyruvate metabolism
    PSDVSF_00250 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    PSDVSF_00250 (lpdA)
   00640 Propanoate metabolism
    PSDVSF_00250 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    PSDVSF_00250 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    PSDVSF_00250 (lpdA)
   00310 Lysine degradation
    PSDVSF_00250 (lpdA)
   00380 Tryptophan metabolism
    PSDVSF_00250 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    PSDVSF_00250 (lpdA)
   00670 One carbon pool by folate
    PSDVSF_00250 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:psef04147]
    PSDVSF_00250 (lpdA)
Enzymes [BR:psef01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     PSDVSF_00250 (lpdA)
Exosome [BR:psef04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   PSDVSF_00250 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox Pyr_redox_dim Pyr_redox_3 HI0933_like DAO GIDA NAD_binding_8 FAD_oxidored Thi4 FAD_binding_2 3HCDH_N Lys_Orn_oxgnase AlaDh_PNT_C Lycopene_cycl FAD_binding_3 2-Hacid_dh_C XdhC_C UDPG_MGDP_dh_N HcgC
Other DBs
NCBI-ProteinID: BCS86783
LinkDB
Position
complement(23748..25112)
AA seq 454 aa
MTYDLVVIGAGPGGFDCAVEAAHYGLKVALVEKDVLGGTCLNRGCIPTKLWLGATSAIEE
LHNQAKVKVASGEVVVDFTALQARVQKHLTGTRKAMAMQLKKLGIDLVEGLGSLGETGVV
SVETSDGEQQLAYKKLVIATGSKPTFFPGIEPDGDCVLDSDMFLNQEAMPESLIIVGAGF
IGLEMAQVAHRFGAKITVIDAMDRVAPLEDPEISKGLQSIFKRWKWDMRLDSRVSGVKTV
DGKAQLTLFDGEKIIADKALVAIGRGPVTQGIGLEEKGIELLFHQIQVNEYMEAAPNIYA
IGDANGQIQLAHAASHQAQYVAAHAAGKISTPYVSGPVPSVLYGAPEVMRVGALENEAYL
MDFETCEVSRAQLAANPMAQAHAFTQGFVKVVWSGGKVVGITAVGHDVSRLVTAATMIVN
QGWTADDIHSIIFSHPSLDESLLMALKTERTKIQ
NT seq 1365 nt   +upstreamnt  +downstreamnt
atgacttatgatctcgttgtaattggagcaggccccggcgggtttgactgcgcggttgaa
gctgctcattacggcctcaaggtcgcgttggtggaaaaagacgtactgggcggcacctgc
ctcaatcgcggatgcattcccaccaaactctggcttggcgccacttccgccatcgaggag
ttgcacaaccaagccaaggtcaaagtggcgtccggcgaggtcgtcgtcgacttcaccgcc
ctgcaggctcgcgtgcaaaagcacctgaccggcacccgcaaggccatggccatgcagctc
aagaaactcggcattgaccttgtcgaagggctgggttcactgggtgaaacaggtgttgtc
tccgtggaaacatccgatggcgaacagcagcttgcatacaagaagctggtcatcgcaacc
ggctccaagccgaccttcttccccggcatcgaacctgacggcgactgtgtgcttgattca
gacatgtttctcaatcaggaagccatgcccgagtcgctcattatcgtgggcgcgggattc
atcggtcttgagatggcacaggtcgcccaccgcttcggtgcgaagatcaccgtcatcgac
gccatggatcgcgtggctccgctggaggacccggaaatctccaagggattgcaatccatc
ttcaagcggtggaaatgggatatgcggctggacagccgtgtctccggcgtcaagaccgtg
gacggcaaggcgcagttgacgctctttgatggagaaaaaatcattgcggacaaggcgctt
gtagccattggacgtggcccggtcacccaaggcatcggccttgaggaaaaaggcatcgaa
ctgctgttccatcagattcaggtcaatgaatacatggaagccgcaccgaacatctatgcc
atcggcgacgccaacggccagattcaactggcccatgccgcgtcgcatcaggcccagtat
gtggcagcccatgccgctggcaagatatcgaccccctatgtctccgggccggtgcccagc
gtgctctacggagctcccgaagtcatgcgcgttggcgcacttgaaaacgaagcatacctg
atggacttcgaaacctgcgaagtgtccagggcacagctcgcggccaatcccatggcacag
gcccatgccttcacccagggattcgtcaaggtcgtctggtccggcggaaaagtggtcggc
atcacagccgtcggtcacgatgtctcccgtctggtgaccgcagcaacaatgatcgtgaac
caggggtggactgcggatgatatccattcgatcatcttctcgcacccatctctggatgaa
tccctgctcatggcgctgaaaacggaaaggacgaaaatccaatga

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