Pseudodesulfovibrio sediminis: PSDVSF_02640
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Entry
PSDVSF_02640 CDS
T08380
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef03420
Nucleotide excision repair
psef03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSDVSF_02640
03430 Mismatch repair
PSDVSF_02640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psef03400
]
PSDVSF_02640
Enzymes [BR:
psef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSDVSF_02640
DNA repair and recombination proteins [BR:
psef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSDVSF_02640
MMR (mismatch excision repair)
Other MMR factors
PSDVSF_02640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
DEAD
AAA_22
Terminase_6N
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
BCS87022
LinkDB
All DBs
Position
complement(274051..276183)
Genome browser
AA seq
710 aa
AA seq
DB search
MSIDFENELNEAQREAVTTTEGPVLVIAGAGSGKTRTIVYRLAHLVQMGVDPSQILLLTF
TRKAAQEMLQRAESILGRSLHGTSGGTFHSFAYATLRQNAMDIGFDNGFTLMDRADSENI
CKEVKDTLKLGKGDRSYPRKNTLLDMVTKSRNKELTIEAILEREAYHLSPYLDDFNEIAD
GYRQFKREHALVDYDDLLFLLDELLEKNEPLRNQLQTRYKYIMVDEYQDTNLVQARIVKY
LAGTKGNVMAVGDDAQSIYAFRGANVANILEYPKIFEGCKVIRLEQNYRSVQPILDLTNE
ILKGATTKFDKNLYSELKSDRLPRVVYPLSDQTQARLVVDQILDFKRKYMLHDVAVLFRA
GYQSFPLEVALTRVGIDYQKFGGIRFHEAAHIKDVLSYLRLVLNPHDLLAWQRAMDHIKG
VGPKTVAKIYKAMHTDDEKYLAKMMKKHDPLKELLVELNKLRSTPARPASVLESVLAFYQ
PILIEKYPDDYPKRQAGLEQLSQIAVNYTDMELLLGDLSLDGDPEEEKRKENAVVLSTVH
SAKGLEWSGVIIIDLVEDRFPSRKAMQRAEDLEEERRLMYVACTRAKEQLMLFVPSSVFN
RASGMSEPTLPSPFIMELPETVYDRLNESYGGGLEQRRRPAASRPSPVFEDDPIEEPPSN
PKASPKKLGVCEHKIYGKGKIIAYIEPNKYRVNFFGFGLKVIIGDYLKFL
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgagcatagatttcgagaacgaactcaatgaagcccagcgtgaagcggtcacgaccaca
gaaggtccggtgctggtcattgccggagccgggtcaggcaaaacacgaaccatcgtctat
cgattggcccacctggtacaaatgggtgtcgatccctcccagattctgctgctgaccttt
acccgcaaggcggcccaggaaatgctgcaacgcgccgagtccatccttggccgctccctg
catgggacttccggcggtacctttcactctttcgcctatgccaccctgcgccaaaacgcc
atggacatcgggttcgacaatggctttaccctcatggacagggcagacagtgaaaacatc
tgcaaagaagtgaaggacacgctcaaactcggcaagggcgaccgctcctatcccagaaaa
aacaccctgctcgacatggtcaccaaatcccgtaacaaggaactgaccattgaagccatc
cttgaacgcgaggcctaccatctcagtccctatctggacgatttcaacgagattgccgac
ggataccgtcagttcaagcgcgaacacgccctggtggactatgatgatctgctcttcctg
ctggatgagctgctggagaaaaacgaaccgctgaggaaccagcttcagacacgctataaa
tacattatggtggacgagtatcaggacaccaaccttgtacaggcgcggattgtcaaatac
ctggccgggaccaaaggcaatgtcatggctgtgggcgacgatgcccaatccatctatgcc
ttccggggagccaatgtcgccaacatacttgaatatcctaaaatatttgaagggtgcaag
gtcatacggctggagcagaactaccgctccgtacagcccatcctggacctgacaaacgaa
attctcaaaggtgccaccaccaaattcgacaagaacctgtactccgagctcaagagcgac
cgattgcccagagtggtctacccgctcagcgatcagacgcaggcacggctggtggtggac
caaatactcgatttcaagcgcaagtatatgctccacgatgtagccgtactctttcgggcc
ggctatcaatccttcccgctggaggtcgccctgacccgtgtgggcattgattaccagaaa
ttcggcggtatccgcttccatgaggcagcgcatatcaaggatgtcctctcctacctgcgc
ctcgtgctcaacccgcatgacctcctggcatggcaacgcgccatggatcacatcaaggga
gtcggtcccaagaccgttgccaagatttacaaggctatgcacacggatgatgaaaagtat
ctggccaagatgatgaagaagcacgacccgctcaaggagctgctggttgaactgaacaaa
ctcaggtcaacaccggcacgccctgcctcggtgctcgaatccgtcctcgccttctatcaa
cccattctgattgaaaaatatcctgacgattaccccaaacgtcaggccggactggagcag
ctcagtcagatcgcggtcaattatacggatatggaactcctgctcggagacctcagcctt
gacggcgacccggaagaggaaaagcgcaaggaaaatgcagtggtcctttcaacggtccac
tcggcaaaaggcctcgaatggtccggtgtcatcatcattgatctcgtcgaagaccgattt
ccctcccgcaaggccatgcaacgggccgaggacctggaagaagagcgtcgcctcatgtat
gtggcatgtacccgagccaaggaacagctcatgctctttgtccccagttcagtattcaac
agggccagcggcatgtcggaacccaccctgccgagtccgttcatcatggaactgccagag
actgtatatgaccgtttaaacgagtcgtatggcggtggattggagcaacgaaggcgaccg
gctgcatcgcgtccgtcccctgttttcgaggacgatccgatcgaggagcctccttcaaac
cccaaggcttctccaaagaaactcggggtatgcgagcacaaaatttacggaaaaggcaag
attattgcctatatcgaaccgaacaaatacagggtgaacttctttggattcggcctcaag
gtcatcatcggagattacctgaaattcttataa
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