Pseudodesulfovibrio sediminis: PSDVSF_04130
Help
Entry
PSDVSF_04130 CDS
T08380
Name
(GenBank) RNA-binding transcriptional accessory protein
KO
K06959
protein Tex
Organism
psef
Pseudodesulfovibrio sediminis
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09190 Not Included in Pathway or Brite
09192 Unclassified: genetic information processing
99973 Transcription
PSDVSF_04130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tex_N
Tex_YqgF
HHH_3
HHH_9
S1
HHH_7
T2SSK
YqgF
HHH_6
HHH
Motif
Other DBs
NCBI-ProteinID:
BCS87171
LinkDB
All DBs
Position
complement(431618..433750)
Genome browser
AA seq
710 aa
AA seq
DB search
MIDTHIQTISRELSLKQQHVKAVATLLDEGATVPFISRYRKEATGTMDEVGVAGVRDRLN
ELAELDKRRESILSSLTERELLTADLKLALQKAQDKAQLEDIYLPYRPKRRTRATMAKER
GLEPLAKIVFSQRGINTSAEAKGFVNPGKDVPDVDAALAGARDIIAENINENARARAAMR
TLFVKRGRFVSKVAKGKEEAGAKYRDWFDWNEPLARIPGHRALAMFRGENEKLLKLSLRP
SEEEATELMRKSVLRGTGQDSHEVGLALDDCYKRLLGPSIENEIRAEVKKRADIEAITVF
AANLRELLLAAPLGQKRVLALDPGFRTGAKLTVLDAQGALKEYSTIFPTGSKNQQKEAAR
VLQTLSTKHAIEAIAIGNGTAGRETEAFVRELNLGIPALLVNESGASIYSASEVARREFP
DLDLTVRGSVSIGRRLMDPLAELVKIDPKSIGVGQYQHDVDQTALKKSLDDVVEQCVNSV
GVDINTASRELLAFVSGLGPVLAQNIVNHRDEQGPFSSRRDLLKVKRLGPKAFEQAAGFL
RVHGKEVLDASAVHPERYALVKQMAKEAGCSVADLVSDETARNKVQIDKYISDEVGLPTL
RDIMAELTRPGRDPRAEFSVFSFAEGVNDISDLYEGMKLPGIVTNVTKFGAFVDIGVHRD
GLVHISQLSDTFVRDPSEVVAAGREVEVTVIGVDTARGRINLSMKNTVEV
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatacacatatacaaacaatatctcgtgaactttcccttaaacaacagcatgtt
aaagctgttgccacccttcttgatgaaggcgcgaccgtgccatttatctcccgctatcgc
aaggaagcaactggcaccatggatgaagtgggcgttgctggggttcgtgacaggctgaac
gaactggccgagttggacaagcgccgcgagtcaatcctgtcgtcactgaccgaacgagag
cttcttaccgctgatctaaagctggcactccaaaaggctcaagacaaagcgcagcttgaa
gatatctatctgccctaccgccccaaaagaaggactcgggcaacgatggccaaggagcgc
gggttggaaccgctggcaaagatcgtgttcagccaacgtgggataaatacaagtgctgaa
gccaaaggatttgtcaatccgggcaaagacgtccctgatgtagacgccgctctggccgga
gcacgagatatcatagctgaaaatatcaacgaaaatgccagggcgcgtgccgctatgcga
acgttgtttgtaaagcgaggcagattcgtatccaaggtcgcaaaaggcaaagaggaagct
ggtgcaaagtaccgtgactggtttgattggaatgaacctctcgctcgcatccccggacac
cgggcactggccatgttccgcggtgagaatgaaaagctgctgaaactctctctgcgtccg
tctgaagaagaggcgacggagcttatgcgtaagtccgtattgcgcggcactgggcaggat
tcgcacgaggtgggattagctctggatgactgctacaaacgtttgctggggccatccatt
gaaaatgaaatacgcgccgaagtaaaaaaacgtgctgatattgaagccattaccgtattc
gcagccaatttacgtgaactgttgttggctgcccctcttggccaaaaacgcgtactggct
ctggaccccggtttccgtacaggggcaaaactcaccgtccttgatgcgcagggagctctc
aaggaatattccactatttttcctacaggctcaaagaatcagcagaaagaggcggctcgt
gttcttcaaaccttgtctaccaagcacgctatcgaagccattgccatcggaaacggtacg
gcagggcgtgaaaccgaagcctttgtccgtgagttgaatctcggcataccagccttgctg
gtcaacgaatccggagcttccatctactccgcatctgaggtagcccgccgtgaatttcct
gatctcgacctgactgttcgtgggtcggtgtccatcgggcgtcgactcatggatccactg
gccgagctggtcaagatagatcctaaatccattggcgtcggccagtatcagcatgatgtg
gatcagactgccctcaaaaaaagcctggatgatgtggtggaacaatgtgtcaactcggtg
ggcgtcgatataaacacagccagcagagaactccttgcattcgtatccggtctggggcct
gtactggcacaaaatattgtcaatcaccgagatgaacaaggccccttctcttcccgtcga
gacctgttaaaagtcaaacggcttggacccaaggcttttgaacaggcagcgggattcctg
cgtgttcatggaaaagaagtactggatgcaagtgctgttcatccagaacgatatgcactg
gtcaaacagatggccaaagaagcaggatgctcggttgcggacctggttagcgatgaaaca
gcccgcaataaggtgcagatcgataaatatatctctgacgaggtcggtctccccaccttg
cgtgatatcatggccgaactgaccagaccgggccgtgatccgcgtgccgaattcagtgtc
ttttcatttgccgaaggtgttaacgatatcagcgacctgtatgaaggtatgaaactgcct
ggtatcgtcaccaacgtcaccaagtttggcgcgttcgtagacatcggcgttcaccgtgac
ggactggttcatataagccagctgtccgacacgtttgtacgtgatccatctgaagtggtc
gctgctggccgtgaggttgaggtgacggtgattggtgttgatacggctcgcggtcgcatt
aatctgagtatgaaaaatactgttgaagtgtag
DBGET
integrated database retrieval system
