Pseudodesulfovibrio sediminis: PSDVSF_04250
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Entry
PSDVSF_04250 CDS
T08380
Symbol
lysA-1
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef00300
Lysine biosynthesis
psef00470
D-Amino acid metabolism
psef01100
Metabolic pathways
psef01110
Biosynthesis of secondary metabolites
psef01120
Microbial metabolism in diverse environments
psef01230
Biosynthesis of amino acids
Module
psef_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PSDVSF_04250 (lysA-1)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PSDVSF_04250 (lysA-1)
Enzymes [BR:
psef01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
PSDVSF_04250 (lysA-1)
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
BCS87183
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Position
447589..448827
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AA seq
412 aa
AA seq
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MHHFEYRDGSLFAEEVSATKLAEEYGTPLYIYSAATFRRHFQAFDSAFKGLDHLTCFSVK
ANSNLSVLRMLGEEGAGMDIVSGGELYRALRAGIDPGKIVYSGVGKRESEIREALEARIL
MFNIESVAELHKINAVAEEMGTVAKVSFRINPDVDAKTHPYISTGMAKNKFGLDIEHSLE
AYKQAVELKNIDPVGMDCHIGSQLTSIDPFLEALDKLLNFYEKLKDIGVDIKYLDLGGGL
GIPYDEEEPPHPTEFGQALVEKLKALPLKIILEPGRVIAGNAGIMITEVVYTKSNPMKNF
LIVDGAMNDLVRPSLYGSYHRIDEVEKNGRETDIFDVVGPICESSDFLARDRELPKMEQG
ERLVVFSAGAYGFTMASNYNTRPRACELIVDGDKVLVARKRETYEDLIENEI
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgcatcattttgaataccgcgacggctccctctttgctgaagaggtcagcgctaccaag
ttggctgaagaatacgggactcctttgtatatttattccgccgctacgttcaggcgtcat
tttcaggcctttgactctgccttcaaaggccttgaccatttgacgtgtttttcggtcaag
gcgaactccaacctgtctgttctcagaatgttgggcgaagaaggcgccggcatggatatc
gtctccggtggcgagctgtatcgtgctttgcgagccggtattgaccccggcaaaatcgtc
tactcgggcgtgggcaagcgcgaatccgagatcagagaagcattggaagcgcgcatcttg
atgttcaacatcgaatctgtcgctgaattgcacaagattaacgccgtggctgaagaaatg
ggtacggttgccaaggtcagtttccgcatcaacccggatgtggatgccaagacccacccc
tatatttcaaccggcatggctaaaaacaaatttggtctggatatcgaacattcactggaa
gcctacaagcaggcagtggaactcaagaacattgatcccgtgggcatggattgtcatatc
ggctcccagctgacctcaattgatccgtttttggaagccctggataaactgctgaatttt
tatgaaaaattgaaagatattggtgtggatatcaagtatcttgatctcggtggtggactt
ggtatcccctatgacgaagaggaaccgccccaccctacggagtttggtcaggctcttgtt
gagaaactcaaggcattaccgctcaagatcattctcgagccgggccgtgtcattgccggt
aacgccggcatcatgatcaccgaagtcgtctataccaaatccaaccccatgaagaatttt
ctcattgtggatggcgccatgaacgatctggtacggccgagcctctatggctcctaccac
cgtattgatgaagtggaaaaaaatggtcgtgagaccgatatctttgacgtagtcggtcct
atttgcgaatccagtgattttctcgcccgggatcgcgaactgcccaagatggaacagggg
gaaagattggttgtcttctccgctggagcgtatggtttcacaatggcttcgaactacaac
acccgtcctcgggcctgcgagctcatagtggatggagacaaggtgcttgtagccagaaaa
cgtgaaacatatgaagatcttatagagaacgaaatctaa
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