Pseudodesulfovibrio sediminis: PSDVSF_04810
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Entry
PSDVSF_04810 CDS
T08380
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
psef
Pseudodesulfovibrio sediminis
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psef03032
]
PSDVSF_04810
03036 Chromosome and associated proteins [BR:
psef03036
]
PSDVSF_04810
03400 DNA repair and recombination proteins [BR:
psef03400
]
PSDVSF_04810
DNA replication proteins [BR:
psef03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PSDVSF_04810
Chromosome and associated proteins [BR:
psef03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
PSDVSF_04810
DNA repair and recombination proteins [BR:
psef03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
PSDVSF_04810
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-CCDC81_bac_2
HU-HIG
HU-CCDC81_euk_1
DUF5666
Motif
Other DBs
NCBI-ProteinID:
BCS87239
UniProt:
A0ABM7P380
LinkDB
All DBs
Position
504507..504782
Genome browser
AA seq
91 aa
AA seq
DB search
MNKSELIKALSEQKKMHVDEATKVVGAFVDSVKEALLRGDRVEIRGFGSFKIKDYEGYTG
RNPKSGTVVQVRPKKLPFFRPGKELKEFINQ
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgaataagagcgaattgatcaaggctctgtcagaacagaagaaaatgcatgtggacgaa
gccaccaaagttgtcggagcctttgttgattctgtcaaagaggctcttctccgcggcgat
cgtgttgagatcagaggctttggcagtttcaagataaaggattatgaaggctataccgga
cgtaatccgaaatctggtactgtcgttcaggtcaggcccaaaaagcttcctttcttccgt
cctggtaaagagctgaaagaatttataaaccaatag
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