Pseudodesulfovibrio sediminis: PSDVSF_04890
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Entry
PSDVSF_04890 CDS
T08380
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef02020
Two-component system
psef02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PSDVSF_04890 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PSDVSF_04890 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psef03021
]
PSDVSF_04890 (rpoN)
Transcription machinery [BR:
psef03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PSDVSF_04890 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_12
Motif
Other DBs
NCBI-ProteinID:
BCS87247
LinkDB
All DBs
Position
complement(511370..512779)
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AA seq
469 aa
AA seq
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MGLELRQQLKLSQQLVMTPQLQQAIKLLQLSRLELLETVQQELMENPFLDESETEADVSD
SSEAMTESQAEEELVRNADWENYLGEFSSTSKQSAARDAEMPEEGMSFEARLASKPSLEG
HLNWQMRLSNFSEHELAIGEIILGNVDTNGYLQASMEEIQSMVQATEEEIEYVLSRIQRL
DPIGIGARTPQECLLVQMEVLGYTDPILVSLVTDHLEDLEKNRYKPLARKFKISMDELKS
YLDLMQTLDPMPGTNFSSTEPHYVSPDVFVYKYGEEFVIILNEDGMPRLQMNTFYMDSMQ
GAAGKEKEYFQEKMRSAAWLMKSLYQRQRTLYKVVESIVRFQRAFFEEGVTKLKPLILKE
VAEDIEMHESTVSRITTSKYVSTPYGIFELKFFFNSALELDDGSQVGSESVKALIKQMIA
EEDTKKPLSDEKIGDELKEKLEVNIARRTVAKYRSAMGIPSSSKRKQYF
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgggattggaactcagacaacagcttaagctctctcagcaactggttatgacaccgcag
ttgcagcaggctatcaagctgttgcagctttcgcgattggaattgctcgaaacagtgcag
caggaactcatggagaatccttttctcgatgagagcgaaaccgaggctgatgtttctgat
tcctcagaggcgatgacagaatctcaggccgaagaagagctggttcgcaatgcggattgg
gagaattatctaggcgaattctccagcacctccaagcagtctgcagcccgtgacgcggaa
atgccggaagagggtatgtcttttgaggccagattggcttccaagccgtctcttgaaggg
catctcaactggcagatgcgtctctcgaatttttccgaacacgaattggctatcggtgag
atcatccttggtaacgttgataccaatggctatcttcaggcctcaatggaagagattcaa
tccatggtgcaagccaccgaagaggagattgaatacgttctttcacgcatccaacgcctt
gatcccataggcattggcgcacgcactccgcaggagtgtctgctcgttcagatggaggtc
cttgggtacacggaccccattcttgtctcgttggtcacagatcatctggaagaccttgag
aagaatcgatacaagccccttgcccgcaagttcaagatctccatggatgagctcaagagt
tatcttgacctcatgcagacccttgatcccatgccgggaaccaatttttccagtaccgag
ccccattatgtcagcccggatgtgtttgtttacaagtatggtgaggagttcgtcatcatc
ttgaacgaggacggcatgccgcggttgcagatgaacaccttctacatggattccatgcag
ggtgcagcgggcaaggaaaaagagtattttcaggaaaagatgcgatctgccgcatggttg
atgaaaagtctgtaccagcggcagagaacattgtataaagtagttgagagcattgtccgc
ttccagcgagcctttttcgaggagggtgtgacaaagctcaaacccctgatcctcaaggag
gtagctgaggatattgagatgcatgaatccacggtgagccgtattactactagtaagtat
gtctcaactccgtatgggatttttgagttaaagttcttctttaattctgccctggaactg
gatgatggttcgcaggtgggttcagaaagcgtcaaggcgcttatcaagcaaatgatagca
gaagaagacacgaagaaaccgctcagtgacgaaaagattggggatgaactcaaggaaaag
cttgaggtaaacatcgccaggcgcacagtcgccaaatatcgttcggcaatgggtattcct
tcttcttcgaaacgcaagcagtacttctaa
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