Pseudodesulfovibrio sediminis: PSDVSF_04940
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Entry
PSDVSF_04940 CDS
T08380
Symbol
kdsA
Name
(GenBank) 2-dehydro-3-deoxyphosphooctonate aldolase
KO
K01627
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:
2.5.1.55
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef00541
Biosynthesis of various nucleotide sugars
psef01100
Metabolic pathways
psef01250
Biosynthesis of nucleotide sugars
Module
psef_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
PSDVSF_04940 (kdsA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
psef01005
]
PSDVSF_04940 (kdsA)
Enzymes [BR:
psef01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.55 3-deoxy-8-phosphooctulonate synthase
PSDVSF_04940 (kdsA)
Lipopolysaccharide biosynthesis proteins [BR:
psef01005
]
Lipid A
PSDVSF_04940 (kdsA)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DAHP_synth_1
NeuB
N_NLPC_P60
Motif
Other DBs
NCBI-ProteinID:
BCS87252
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Position
complement(515725..516528)
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AA seq
267 aa
AA seq
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MTDLYTASLEGPFIIAGPCALESREIALQAAETLAGLADKLGLTLIFKSSFDKANRTSVT
SFRGPGMEKGLTMLSEVKSTFGLPVVTDIHHPEQAAPVAEVADVLQIPAFLCRQTDLLVA
AAKTGAVVNIKKGQFLAPWDMKNAVDKVRASGNERVWLTERGSTYGYNNLVVDMRSIPQM
RAFDVPVVMDATHSVQLPGGMGGSSGGQREYVPVLASAAVAAGANGVFMEVHPDPDKALC
DGPNSLPLDQVESLLVRLKALWELNRG
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgacagacctctatacagcaagtctggaagggccgttcattattgccgggccttgtgca
cttgaaagcagggagatcgctcttcaggctgccgagaccctggccggactggcagataaa
ctgggtctgacgctgatcttcaagagttcttttgacaaagcgaacaggacgtccgtgacc
agttttcgtggtccgggcatggaaaaaggactgacaatgctgtccgaggtcaaatcgacc
ttcggactgccagttgtcacggacatccaccaccccgaacaagccgcacccgtggccgag
gtggcggatgtgcttcagattccggcttttctgtgtcgtcaaaccgacctactcgtggct
gcggccaagaccggggccgttgtcaatatcaagaaagggcagtttctggctccatgggat
atgaaaaacgccgtggacaaggtacgcgcttcgggcaacgaacgagtttggctcacggag
cgcggctccacctatggttacaacaaccttgtcgtggatatgcgttccattccgcagatg
cgtgcgtttgatgtgcctgtggtcatggatgcaacgcactcggttcagttgcccggcggc
atgggtggttcaagtggcgggcagcgggagtacgttccggtgttggcctcggctgcagtg
gccgcgggcgccaacggtgtctttatggaggtacaccccgatccagacaaggccttgtgt
gatggccccaacagcctcccactggaccaggtcgagtcgctgcttgtccgtttgaaagcc
ttgtgggagttgaatcgtggttga
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