Pseudodesulfovibrio sediminis: PSDVSF_05150
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Entry
PSDVSF_05150 CDS
T08380
Symbol
recD2
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PSDVSF_05150 (recD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psef03400
]
PSDVSF_05150 (recD2)
Enzymes [BR:
psef01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PSDVSF_05150 (recD2)
DNA repair and recombination proteins [BR:
psef03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PSDVSF_05150 (recD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
OB_YrrC
UvrD_C_2
Viral_helicase1
AAA_11
HHH_5
SLFN-g3_helicase
PIF1
HHH
nSTAND3
AAA_22
UvrD-helicase
AAA_28
PhoH
NPHP3_N
HHH_2
Helicase_RecD
NTPase_1
Ribosomal_S13
AAA
NACHT
DUF7440
AAA_16
AAA_23
5_3_exonuc
AAA_18
MeaB
AAA_29
RsgA_GTPase
T2SSE
RNA_pol_A_CTD
ABC_tran
TsaE
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
BCS87273
LinkDB
All DBs
Position
complement(542582..544792)
Genome browser
AA seq
736 aa
AA seq
DB search
MSDNQLLYLQGAEVQNVVYHNKENGYAIARVKVKDEPGQTTIVGILGELSAGATLDLNGK
WVTHAKFGRQFEVATFEQSRPATENGVIKFLQSSIKGVGEKTAAVIVEEFGVEVLDILDD
DPEQLLKIRGISKKKLKEIIESWGRQREIKNLLVFLQTHNVATTFAGKIFHLYGAQAESK
LRENPYDLAYEIRGVGFKTADQMAMKLGFAPDCAQRLEAALAYTLLTGCERSGHLFISKP
KLLEDVARMLDTSDFDKLELALYGLEEKKRIRIEDLSAQGISEAVYLIYFFHFENETTQR
LYQLVSHPTPISRKKIDKTLPRVEEKLGFVLSDEQREAVFEACSNKVFIITGGPGTGKTT
ITKAIMLTLKELGLQIKQAAPTGRAAKRMTEATGHPAKTVHRLLQYQPDGGFHYCEDQKL
KADVLVVDEASMVDAQLFVAILRALPHTCRLILVGDVNQLPSVGPGNVLGDLINSHKIPC
AVLTHIFRQAQESFIVVNAHRVNSGQFPRQHPCQAPEADFFWIPQEDSIKVQKLILDSVC
ERIPQRYNLDPLRDIQVLTPMHKGDVGTQALNVALQARLNPPGPGVREVKRKFATFREGD
RVIQLKNNYDKEVFNGDLGWIVEVDTEDHELFVEFDGNHVHFESSDLDELGLAYAVSVHK
SQGSEYKAVVMPVVTQHFLLLQRNLIYTGLTRARELAVLIGSERAFKIGLNNATAGKRNT
HLAYRLQAIFDENRLK
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacaatcaactcctctacctacagggcgcggaagtccagaatgttgtctatcac
aacaaggagaatggctacgccattgctcgtgtcaaggtgaaggatgaacccggacaaacc
acgatcgtgggtattctgggcgaactttcagccggggcgacacttgatctcaacggcaaa
tgggtcactcatgccaaatttggtcgacagtttgaagttgcgacctttgaacagtcccgt
cctgccacggaaaacggggtcatcaagtttcttcaatcctcaatcaagggcgtcggggaa
aagaccgctgctgtcatcgtggaggagtttggtgttgaggtgctggatattctggatgat
gacccggaacagctgctcaaaattcgtggtatctcaaagaagaagctgaaagagataatt
gaatcatgggggcgccagcgggagataaaaaatctgctggtctttcttcagacccataat
gtcgccacgacgtttgccggaaagatatttcatttgtacggggcgcaggctgaaagcaaa
ttgcgggagaatccctacgatctcgcctatgaaatcaggggagtagggttcaagaccgct
gatcagatggccatgaagctcgggtttgccccagactgcgcacagcgtctggaagcggcg
ctggcctacacgttgctcactgggtgcgaacggagcgggcacctgtttatttctaagccc
aagctgttggaagatgtggcccgtatgctcgacacgtctgatttcgacaagcttgagctc
gctctctacggattggaagaaaaaaaacgtattcgcatcgaggatttgtctgcgcaaggt
atctccgaagctgtttatctgatatatttttttcatttcgagaacgagaccactcaacga
ctttaccaattggtcagccatcccacccccatcagtcgaaaaaaaatcgacaagacattg
ccacgagtggaagaaaaactcgggtttgtgctgtctgacgaacagcgtgaagccgtgttc
gaggcgtgctctaacaaggtcttcatcataaccggtggtcctgggacgggtaagaccaca
attaccaaggcgatcatgctgactctcaaggagttggggcttcagatcaaacaggctgca
cccacggggcgagccgcaaaacgcatgaccgaggctaccgggcatccggcaaagaccgtg
caccgcctgttgcaataccaacccgatggcggatttcactattgtgaagaccagaaactc
aaggctgacgtgctggtagtggacgaggccagcatggttgatgcccagctgtttgtcgct
attttgcgcgcattgccgcatacctgtcgtttgattctggtaggggatgtcaaccagttg
ccgagtgtggggccgggtaacgtgcttggggatctcataaattcacacaaaattccgtgc
gcggtcctgacacatatttttcgtcaggcgcaggaaagctttattgtcgtgaacgcgcac
cgtgtgaattcaggtcaatttcctcgtcaacatccctgccaggcaccggaggccgatttt
ttctggataccgcaggaagactcgatcaaggttcagaagctcattctagactccgtctgc
gagcgcataccgcaacggtataaccttgatcccctgagggatatccaggtactgaccccc
atgcacaagggtgatgtcggtacgcaggcattgaatgtggcgctccaggcacggctcaat
ccgcccggccccggagtgcgtgaagttaaacgtaaatttgccacattcagagaaggtgat
cgcgtcattcaactcaagaacaattatgacaaggaggtgttcaacggagacctcggctgg
attgtcgaagtggacacagaggatcatgagttgtttgtcgagtttgacgggaaccacgtg
cattttgaatccagtgatctggatgaacttggtttggcctatgccgtcagtgtccataaa
tcacagggcagtgaatacaaggctgtggtcatgcctgtggtcacccagcatttccttctc
ttgcagcgcaacctgatctataccgggttgactcgtgctcgtgagctggctgttctgata
ggttcggagcgagccttcaagattggcttgaacaatgccacggcaggaaagcgcaatacg
catctggcttatcggcttcaagccatctttgatgagaacagactcaaatag
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