Pseudodesulfovibrio sediminis: PSDVSF_05180
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Entry
PSDVSF_05180 CDS
T08380
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef03030
DNA replication
psef03430
Mismatch repair
psef03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSDVSF_05180
03430 Mismatch repair
PSDVSF_05180
03440 Homologous recombination
PSDVSF_05180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psef03032
]
PSDVSF_05180
03400 DNA repair and recombination proteins [BR:
psef03400
]
PSDVSF_05180
Enzymes [BR:
psef01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSDVSF_05180
DNA replication proteins [BR:
psef03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSDVSF_05180
DNA repair and recombination proteins [BR:
psef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSDVSF_05180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNAX_ATPase_lid
AAA
AAA_22
RuvB_N
AAA_5
AAA_18
TIP49
AAA_30
AAA_14
AAA_16
AAA_19
Mg_chelatase
TsaE
DEAD
AAA_2
Motif
Other DBs
NCBI-ProteinID:
BCS87276
UniProt:
A0ABN6EQ46
LinkDB
All DBs
Position
complement(545905..547734)
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AA seq
609 aa
AA seq
DB search
MSTSNLTAKYRPQTFGDVAGQQAVKSILSRAAAQDKIAPAYLFSGTRGVGKTTIARIFAK
ALNCVEAPTAEPCNKCANCKQITAGVAVDVIEIDGASNRGIDDARRLKEDIGYAPVECRY
KVFIIDEAHMLTKEAFNALLKTLEEPPPRAVFIMATTEHHKFPATIISRCQHYTFKMLPQ
GELVTHLEKLMHAEELQYEPGALQIIAKRGAGSVRDSMSLLGQALAMGEDVLKESDVRGF
LGLAGQDVFFGLMEAMESRNLVAVGQVLRQVLDQGLDLGFFLRELTNCWRNMFLLRQAGK
EALPLLGLSGEEAASWMDWAGRFEAAHIHACWQMTLDGQRKVMTSLEPALALELLLLNLT
SLPDLINLETMTANVPGGGAPQRPMGGQGGMQGGPNTGSMQGQGGMPQGGQRFSPHSQNQ
PVQHIPRQPRQTTPQSSAPPPPRQSDPAPVEAEPEPVAPSEAAPMTESAAPPVQPVGQPV
DRQPVGASLSGPKNWEGFLRFVEERNGQAGVKVSMLHLADGEFKQNRLEITCKSKTMCSR
LLEKQIFTALEELAREFFDEGVEVRVETGDIVVPKSDRQLMEEAENHPGVNKIMESFSAQ
MISVSPRKH
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatccaatcttactgccaagtatcgtcctcagacctttggggatgtggccggt
cagcaggccgtcaaatccatcctttccagagccgcggctcaggacaagattgcccctgcc
tatcttttttccggtacgcgcggtgtgggaaagaccaccattgcccgcatctttgccaag
gcattgaactgtgtggaggcgcccaccgcggaaccgtgcaacaaatgcgcaaactgcaag
cagataaccgcgggcgtggccgtggacgtcatcgagattgacggcgcatccaatcgcggt
attgatgatgcccgacgtttgaaagaggacatcgggtacgctcctgttgagtgtcggtat
aaagtgttcatcattgatgaagcgcacatgctcaccaaggaagcgttcaatgcgctgctg
aagacccttgaggaaccgccgccgcgcgccgtcttcatcatggcaactacagagcatcac
aaatttccggctaccatcatcagtcggtgccagcactatacatttaaaatgctgcctcag
ggtgagctggtgacacaccttgagaaactcatgcatgccgaagagctccaatacgaacct
ggagcactccagatcatcgccaaacgcggcgcgggaagtgtgcgcgattccatgtcgctt
ctcgggcaggcgttggccatgggcgaagatgtactcaaggaatcggatgtacgtggattt
ctcggattggcggggcaggacgtctttttcggtcttatggaagccatggagtcacgcaat
ctggtcgctgtagggcaggtgttgcgtcaggtcctggatcagggactcgatctcggattt
ttcctgcgggagttgaccaattgctggcgaaacatgtttctgctgagacaggccgggaaa
gaggcgttgccgctgcttgggctgtcaggcgaggaggccgcatcctggatggattgggcc
ggacgatttgaagccgctcatattcatgcctgctggcagatgacgttggatggtcagcgt
aaggtcatgaccagtcttgaaccggcgttggctttggaactcctgttactcaatttgacc
agtctgccggacctgatcaatcttgaaaccatgaccgccaatgtgcccggtgggggcgcg
ccccagcgtcctatgggcggacagggcggaatgcagggaggaccgaacaccggctccatg
cagggacagggcggcatgcctcagggcggacaacgtttttctccgcacagtcagaatcag
cctgttcagcatattcctcggcagccccgtcagacaacaccgcagtcatcagcaccacca
ccgcctcgacagtcggatcccgctcctgttgaagcggaacctgagcctgtcgctccatcc
gaggcagcgcccatgactgagtctgccgcaccgccggttcagcccgtggggcagccagtg
gacagacaaccggttggcgcttcgctatccggcccaaagaattgggagggatttctccgg
ttcgtggaagagcgtaatgggcaggctggtgtcaaggtgagcatgctccatttggctgat
ggcgaattcaagcagaatagattggagattacctgcaagtccaaaacaatgtgctctcga
ttgttggaaaaacagatttttacagcacttgaggagctggcgcgggaattttttgatgaa
ggggttgaagtccgtgtggaaacaggcgatatcgttgttcccaaatcggataggcaactc
atggaagaagcggagaaccatcctggcgtgaataagatcatggagtctttcagcgcccag
atgatttctgtgagtcccagaaaacactaa
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