Pseudodesulfovibrio sediminis: PSDVSF_10500
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Entry
PSDVSF_10500 CDS
T08380
Symbol
hup-3_2
Name
(GenBank) DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
psef
Pseudodesulfovibrio sediminis
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psef03032
]
PSDVSF_10500 (hup-3_2)
03036 Chromosome and associated proteins [BR:
psef03036
]
PSDVSF_10500 (hup-3_2)
03400 DNA repair and recombination proteins [BR:
psef03400
]
PSDVSF_10500 (hup-3_2)
DNA replication proteins [BR:
psef03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PSDVSF_10500 (hup-3_2)
Chromosome and associated proteins [BR:
psef03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
PSDVSF_10500 (hup-3_2)
DNA repair and recombination proteins [BR:
psef03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
PSDVSF_10500 (hup-3_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-CCDC81_euk_1
CCDC90-like
Motif
Other DBs
NCBI-ProteinID:
BCS87808
LinkDB
All DBs
Position
complement(1085743..1086015)
Genome browser
AA seq
90 aa
AA seq
DB search
MTKAELVAKIADKNGTSKAQAEASMNAILDIIQDELAAGNKLTLTGFGTFSVSERKARTG
RNPRTGAEIKIPATKVAQFKPGKVLKDAVK
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagctgaactcgtagcgaaaattgctgacaagaacggtacctccaaggcccag
gctgaggcatccatgaacgccatcctcgacatcattcaggacgagctggccgccggcaac
aagttgaccttgacaggtttcggtacttttagcgtgagcgaacgcaaggcccgcactggt
cgcaaccctcgtactggtgccgagatcaagattccggccaccaaagttgcccagttcaag
cccggcaaggtcctcaaggacgctgtgaagtaa
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