Pseudodesulfovibrio sediminis: PSDVSF_11140
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Entry
PSDVSF_11140 CDS
T08380
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
psef
Pseudodesulfovibrio sediminis
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psef03016
]
PSDVSF_11140
Enzymes [BR:
psef01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PSDVSF_11140
Transfer RNA biogenesis [BR:
psef03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PSDVSF_11140
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
BCS87872
LinkDB
All DBs
Position
1149628..1151682
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AA seq
684 aa
AA seq
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MANISTLGTSVRPGTVVEFMHGDQPQLAWVLEEFSGKLRLLTINKREMKLPAVRLLPWQG
PAGSPDVSRQDIQNTLNQHQEIRGEIQAGLDVMELWDLAQGEVEAAPLSWFAGLLWEDPT
PDQIAALGRAMLQAKTHFKFRPPNFEVWSAEKVELKMQQKTEEKAREAVTSAGQTLLKEL
WTAYSQGRKPQLPVLDADLKANLTRILRRKVGDTLDESERKIWTAISKGLPDLQHLALLL
AQTWGVLPLHHNFHLDEADFAWKNEWSESFSNEINKIKDAFSNQTEGPETNEFVTIDAIT
TRDIDDAFRIVSTDSGYTLSIALARPDIHWEFGSPLDRAVMYRATSLYLPEGTSHMMPEE
FGTGLYSLIGGETRPAMIADFHLDENGVLLSVTPRMAWIKVSANITYEDADAAIRDKTDA
AMVLAHQLAEKLIDRRIESGACVIRRPEPVVTVEGEGMQSKVEITLKTPTPRSELVISEF
MILANSGLAQWAGENDIPLLHRTQDIALPQEAAGIFTEPADILRSVKLLLPPTLETNPKR
HAALGVPAYAPITSPLRRYTDFINMAQVCSFLSDGTPRLNKDELDQLIVHLNMRIQAVST
VQRFRPRYWKLVYLAKQRKRYQSAVLVEENGPMAVLAMPHLQVNVRAPKKMLGDKLYPGQ
QFQINFQRVDPLTNEIRIAEALEE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacatatctactctcggcacttctgtccgacccggcaccgtggtggaattcatg
catggtgaccaaccccagcttgcctgggtacttgaagaattctccggcaaactccggctg
ttgaccatcaacaaacgcgaaatgaaacttccggccgtccggctgctcccctggcaggga
cctgccggctcccccgatgtctcccggcaggacatacagaataccctgaaccagcatcag
gagatccgtggagagatccaggccggacttgatgtcatggagctctgggacctggcgcag
ggggaagtggaagccgcaccgctcagctggtttgccgggctcctgtgggaagatcccacc
ccggaccagattgccgcccttggccgcgccatgcttcaggccaaaacacatttcaagttc
cgccctccgaatttcgaagtctggtccgctgaaaaagtggaactcaagatgcaacagaag
acagaggaaaaggcacgcgaagccgtgacctctgccggacagaccctgctcaaggagctg
tggactgcgtatagccagggtcgcaagccgcaactgcccgtccttgacgcagacctgaaa
gcaaacctgacccggattctccggcgcaaagtgggcgatacgttggacgaaagtgaacgc
aagatatggacggccatctccaaagggttgccagacctccaacacctcgccctgctcctg
gcgcagacatggggagtcctgcccctgcatcacaacttccatctggatgaagccgacttt
gcctggaaaaacgagtggtcagaatccttttccaatgaaatcaataaaataaaagatgca
ttctccaatcaaacagaaggaccggagacaaatgaattcgtcacaatagacgccatcacc
actcgtgacatcgacgacgcattccgtatcgtgagtacagactcgggatacacgctctcc
atcgccctggcgcggcccgacatccactgggaattcggttctccgctggacagggccgtc
atgtaccgcgccaccagcctctatctgcccgaaggcaccagccacatgatgccggaagaa
tttggcacaggactctacagtctgataggcggcgagactcgcccggccatgatcgcggac
ttccatctggatgaaaacggcgtcctcctctcggtcaccccgcgcatggcctggatcaag
gtgtcggccaacatcacctatgaggatgcggacgctgccatcagggacaagaccgacgca
gccatggtgctggcccatcaactggctgagaagctcatagaccgccgcattgaatccggc
gcctgtgtcatccgcagaccggaacccgtggtcaccgttgagggcgaaggtatgcaatca
aaggtggagatcaccctgaagacgcccaccccccgctccgaactggtcatcagtgagttc
atgatcctggccaactccgggctggctcaatgggccggagagaacgacatcccgcttctg
caccgtacacaggatatcgcccttcctcaggaggcagcgggtatcttcaccgaaccggca
gacatccttcgctcggtcaaactgctgctgccgcccacccttgagaccaaccccaaacgc
cacgcagcacttggtgtcccggcctatgcgcccatcacctcaccgctccggcgttacacg
gatttcatcaatatggcgcaagtctgttcctttctcagcgatggaacgccccgcctgaac
aaagacgaactcgatcagctcatcgtgcatctgaatatgcgtatccaggctgtgagcacc
gtccaacggttccgcccccggtactggaaactcgtctacctcgccaaacagcggaagcgc
tatcaatccgcggtactggtcgaagaaaacggtcccatggcggtgttggccatgccgcat
ctccaggtgaatgtgcgcgcccccaagaaaatgctcggcgacaagctctaccccggccag
cagttccagatcaattttcaacgcgtggatccgctgaccaacgaaatccgtattgctgag
gccctggaggaatag
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