Pseudodesulfovibrio sediminis: PSDVSF_12370
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Entry
PSDVSF_12370 CDS
T08380
Name
(GenBank) type I secretion C-terminal target domain-containing protein
Organism
psef
Pseudodesulfovibrio sediminis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_4
Big_9
Cadherin_5
Big_11
VWA_2
VWA
CshA_repeat
Sec23_trunk
Motif
Other DBs
NCBI-ProteinID:
BCS87995
LinkDB
All DBs
Position
1286569..1295526
Genome browser
AA seq
2985 aa
AA seq
DB search
MADPKTPTLQVSLPGSGKTTTYQLAADTPVKFDFDISEASFAGENGNLVITLEGGGTIVL
EGYQDLAESGALPTFELMNGELVAGDVYLFAFPDTQTADDVETAADGATGGSGAGAYSDD
AGSLGDGIDALGGQGDAYARTAFNTLDPTGGNQAPIANDDFNEVTEEGDPDFNMEEHVQF
VEGGEYQGGEYQGGEYQGGENTHEPSGDFFQTDDDGSGFFVNYPNPEQTNEIIEGNVILG
DENGGVADTDVDHNIDLLKMSTIDYDGVDHNGENPGAEVVPEGGSVSVEGKYGTLTINSD
GSYTYELDQALADELNEGDVFDEVFNYNIVDPEGAVSNTAQLTISVFGSNDMPVAVADHN
VTAVEVGDSSAYELAADVDDAELGSVTIHGGEGAVFAQGGEGYDYTESDFTTVTGNVLAG
DDMGSGTDYDPDSGDQPDGVSLFVMGVYSHGTYDIDIEEPNEVGGEVADGQTYDVAEAAG
AVSVDGLYGTLTIQPDGSYTYELYTPDSNPDQYPNLDELNYDNPGTDQFTYAIMDDSGAL
GYSYQNLTFTVNGANDKPVGYADENSIEEFGIKNGDGEGTAAIVSGNVITGESAGDVADD
DVDNTEMFVHSVISQNDSGTLYTSDGDPDNVDSMDIEGEYGTLTIHADGSYEYELHNDAE
NVQALNEGDNPTDVFTYTLTNTYDDGVFSESATLTINVIGSNDNPVAVADTNAFTESVDD
ESAAIVEGNVLAGDADTGAGADTDVDNVLADFEVTGIQQTGGVEPTDTMGYDYALQGQFG
TLYMNVDGTYKYVEDANATDYLNNDDEVVTDVFNYTMTDGEAVHTGFDTSTLTITITGAN
DAPVAHADTNAFTESVNDDPAASVSGNVLAGDDVTGAGADTDVDNVLADFTVTDVTSNNT
DNEAETNTNGYDYVLNGQYGTLYLNADGSYEYVEDPDATDPLNVGDDPVTDTFTYTMSDN
QDGDPKTASSTLTITIDGTNDAAIITGDDAGSMTEDMDVTAAGFLTDSGQLFASDVDNTD
NLFQEDEIVDDQGGTFTMNADGTWSYEISNASVQHLGEIDGVNDGFTKDFTVKSTDGTEH
TVTVVVNGENDAPLAADFTVQGNNFGEPIAIDFDVAPVTDVEDDYSTTDDLDTSILITSL
PESGTLYYDGVEVTDTDIQNGTTFEDLDNFTYVGDAPASQGLLLGSRIAEDAGLDTWGER
VNKSTRVMEFDSDGDGTPDTTITTHINQGALKVFHDQAGHIDHGLANKDHSGLDAGETLT
IDFGGKDVSSAEIGFGGLGGYFDDNSTQEAFATWEAYDDGVLVASGTVNNETMTWTVGDN
SGTIDNGDGDTFQSLVLDQSILDGAAFDQIVFGTTEDDARDWNANWELQYVDVEFAQSDS
FTYRPVDSEGLDNDGDPYVVTIDVLPGALNEDPTAVLDAKTVNEPNLDGLDSSVSDNVLY
NDIDADNTPGEMSVTEVTFGTTHVDFVNDKVSGDAVINPDGTATITGVHGNLVIGSDGDY
TYTATDETLPEGATPTETFTYTMTDGDTVDNDPVAQSADLVITVNGINDAPTIEAAAQET
PFVEAGDASEQDLYARGDVDFNDVDLNDEIDISSEYNDDIRWSGGELNSDMIAALTGGTF
TATATAQAAPGSTSWTYDAHNLDLDFLAEGESITFSYNIKATDSAGATDSDTVTITINGS
NDGPVAIDDHFGEGDDTDPTVVTVLTQDAVSDVHSLNLADPDGDGSVTFSAFTGDPTADM
TTWSESELGSENRGSFSAIGVADNNNQEVDGDEILHLTLDNGPAQSVTLTFEALFNNASE
TEGAFVQAYDSEGNALGDPIFVQATADGRPTITLDVFEQQYDQPIAEIALYSDDNHQTDF
LIHGVEYETMGEVDYIFYEDQNESGTNPIVIEADDILVNDTDPEGDALHIASVSAVPGGH
GTPVLVTDTNGNVTGVQFDADQDFYGTASFEYTVSDGDLTDTATITLYIHPVNDAPVAAN
DVNSGLEDGSVSGNVIDGDASHVGQDTDVDGDSLSVTKFTVDGTEYNAGQTAELDGGDLV
INGDGSYTFTPDANWNGDVPTATYTITDHNGGTDSADLDITVTPVEDPTNITAHDNGSVL
EDNPTDLVGDNLVTTGNVTFEDADGNGAMSTTPTWLGGTDEDGNALSGPIGSFTMNADGE
WTFTVDNTSSTVQNLDTDESITQNFQVTTADGNDTETITVTINGEDDNAAPVAVPDLYDN
TPDSDTFGFNVVTEGGINVSTNPSNYLLIVDTSGSMEPNRMTAAKDALKDMLEDLQDSLA
KGVSTTVGIIDFDSNVVQDTFIITGTAGDVDSGSVSAGYTDAIAFINTMKGYGVNEGTNY
TAAIDAGIDWVNANPGNTQAVFISDGSPNEGGGAWRSDSQALGNTDGVHLTAVGIDYAND
NLVIIDEDDSPITISSGQLGSLLSNIVSQTVTPNTTASGNVLDNDYDTDNVAPVDANHGL
VVTEVALGEDADTGFIELSDTTGDDADTAILTGQYGTLTIHTDGSYEYTPDTAAADALNG
GETETESFTYTVADSNGATDTATVSFLINGSNDAPIAIDDSYTGIVVGHTDTDLVTDNFN
LSGTPTTYSGNGISISTNNGYLVDIDGDLGVHWGWFDRDSINNGDKVRIDVTDSQGTDEM
QIKFTTGHDTHTNDYAAFDGNDDAKIKVHYVGGGKKTYNIDSDDLVNGTYTLTGTASKNI
DWVEVEAPGGNDDFTIESVTIAASTATLDDLGPNVANGEAVGNLLDNDWDVDNGDSIHVT
DIDGTTVADNGDTTIDGDHGTLTIDADGNWSYDLDDDLSSLTSSTTEHFDYTVTDSHGAT
DTASLDIPLHVDPNVVDTAHETDVNGITEHLMSGTSGDDLIYIADDATMVSLDDGGSDTV
IIDPNYIGTAGGDVTVTGFEGDDSLILNDLDSMSISIQQNGSDTVLTIDDGNTATSDPSL
TITLENYSLQGVEAHDLPAHMDIHGDSESLGSLIQAIIDSPEYNN
NT seq
8958 nt
NT seq
+upstream
nt +downstream
nt
atggctgacccaaagacccctacactgcaagtatcccttccgggatcgggcaagacaacg
acgtatcaactcgcagcagatacgcctgtcaagttcgacttcgacataagtgaggcctct
tttgcaggcgaaaacggcaaccttgtcatcacccttgaaggcggtggcactattgttctt
gaaggataccaggatctcgccgagtctggtgcccttcccacgtttgaactcatgaacggc
gagctggtagccggcgacgtctatctctttgcttttcccgacacacagacagccgacgat
gttgaaaccgcagcagacggtgcaacaggcggttccggtgcaggcgcatactctgacgat
gcaggctccctgggagacggcattgacgcgttaggcggccagggcgacgcatatgctcgc
acagcattcaacacccttgaccccactggaggcaaccaggcccccattgccaatgacgac
ttcaacgaagtcaccgaagaaggcgatccggacttcaatatggaagagcatgtccagttc
gtcgaaggcggcgagtaccagggcggtgagtaccagggcggtgagtaccagggcggtgag
aatacacacgaaccctctggagatttcttccagaccgacgatgacggctccggctttttt
gtgaattaccccaaccctgaacagaccaacgagatcatcgagggcaacgtcatcctgggt
gacgagaacggtggcgtggctgacacggacgtcgaccacaacatcgatctcctcaagatg
agcaccattgattacgacggcgtcgatcacaatggcgaaaaccccggtgctgaagttgtg
cccgaaggcggcagcgtatctgttgaaggcaagtacgggactctgaccatcaactccgat
ggttcatatacatatgaattggaccaagcgctcgcagacgaactgaatgaaggcgacgtc
tttgatgaggtcttcaactacaacatcgtcgaccccgaaggcgctgtgagcaacaccgct
caattgactatttcggtcttcggttccaacgacatgcccgtagcggttgccgatcacaac
gttactgcagttgaagtcggtgactcctcagcctacgaactggctgctgatgttgatgac
gccgagctcggctccgtgaccattcacggtggtgaaggcgcagtgttcgcccagggcggc
gaaggttatgactacaccgaaagcgatttcaccactgtcaccggcaacgtcctcgcgggc
gatgacatgggcagcggcacggattacgatcccgactccggcgatcagcctgacggcgtt
tccctgtttgtcatgggcgtttactcgcatggcacctatgatatcgatatcgaagagccc
aacgaagtcggcggcgaagtcgcagacggccagacatacgacgtggccgaagccgctggc
gcagtttccgtcgacggcctttacggcacactgaccatccagcctgacggcagctatact
tacgaactctatacgccggattcaaacccggatcagtaccccaatctcgatgaactgaat
tacgacaaccccggtaccgaccagttcacctatgcaatcatggatgactccggcgcactg
ggctacagctaccagaatctgacattcacggtaaacggcgccaacgacaagcccgttggc
tacgctgacgagaattccattgaggaattcggcatcaagaatggtgacggcgaaggcacc
gccgcaatcgtttccggcaacgtcatcaccggcgaatccgcaggcgacgtggctgacgac
gatgtggacaacaccgagatgttcgttcactcggtcatttcccagaatgacagcggcacc
ctgtacacatctgacggcgatcccgacaatgttgactccatggacatcgaaggcgaatac
ggcaccctgaccatccacgccgacggttcttacgaatacgaactgcacaacgacgctgag
aatgttcaggctctgaacgaaggcgacaatcccactgacgtcttcacctacaccctgacc
aacacatatgacgacggcgtcttcagcgagtctgcaaccctgacaatcaacgtcatcggt
tccaacgacaaccccgttgccgtggcagacactaacgccttcaccgaatccgttgatgat
gaaagcgcggccattgtggaaggcaacgtacttgccggcgacgccgacaccggagccgga
gccgacacggacgtggacaacgttcttgcagactttgaagtcaccggcatccaacagacc
ggtggcgtggagcccactgacaccatgggctatgattacgccttgcaaggtcagttcggc
actctttatatgaatgtagatggtacgtacaagtacgtggaagatgccaatgccacagac
tatctgaataacgacgacgaggtcgtcactgatgtattcaactacaccatgactgatggt
gaagcggtacacacaggtttcgatacctccaccctgaccattaccattaccggcgccaat
gacgctccggttgctcatgccgataccaacgcctttaccgaatccgtaaacgacgatccg
gcggcttctgtcagcggcaacgtgctcgcaggtgacgacgtcaccggagccggagctgac
accgacgtggacaatgtccttgccgacttcaccgttaccgatgttaccagcaacaatact
gacaacgaggctgagaccaacaccaacggctacgactacgtcttgaacggccagtacggc
acgctgtacctgaatgctgacggctcctacgaatacgtggaagaccctgacgccaccgac
cccctgaacgtaggcgatgatccggtcaccgacaccttcacttacaccatgtccgacaac
caggacggcgaccccaagaccgcatcctccacgctgaccatcaccatcgacggcaccaac
gacgcagccatcatcaccggcgacgacgccggcagcatgaccgaagatatggatgtgact
gccgccggtttcctgaccgacagcggacagctcttcgcgtctgacgtcgacaacacggac
aacctgttccaggaagacgagattgtcgacgatcagggcggcacgttcaccatgaacgct
gacggcacatggtcgtatgaaatcagcaacgccagcgtccagcacctgggcgaaatcgac
ggcgtgaacgacggcttcaccaaggacttcaccgtcaagtccaccgatggcaccgaacac
accgtgaccgtggtggtcaacggcgagaacgatgcccccctggctgcggacttcactgtc
cagggtaacaacttcggcgaaccaatcgccatcgacttcgacgtggcccccgtgactgac
gttgaagacgactacagcacaactgacgacctcgacacgtccatactcatcaccagcctg
cccgaaagcggcacgctctactacgatggcgtggaagtcactgatacagacatccagaat
ggcacgacgttcgaggatctcgacaacttcacctatgttggtgacgctcctgcaagccag
ggccttctgcttggttcccgcattgcggaagatgccggactggatacctggggcgagcga
gtaaacaagtccacccgcgtcatggagttcgactctgatggcgacggtactcccgataca
actatcactacccatatcaaccagggagccctcaaggtcttccacgaccaagccggtcac
attgaccacgggcttgccaacaaggaccacagcggccttgatgccggtgagactttgacc
atcgacttcggtggcaaggatgtctcctctgccgaaatcggctttggcgggttgggcgga
tactttgatgacaactctactcaggaagcgtttgctacctgggaagcctatgacgatggc
gtgctggttgcttcaggcacggtcaataacgagaccatgacctggaccgttggcgacaat
tcaggaaccattgacaacggagatggcgacaccttccagtccctggttctcgaccaaagc
atcctcgatggcgcagcctttgaccaaatcgtgttcggcaccaccgaagacgatgcaaga
gactggaacgccaactgggaactgcagtatgtggatgtcgagtttgctcagtcggactcc
ttcacgtaccgccctgttgacagcgaaggcctggacaacgatggcgatccttatgtggtc
actatcgatgtgctgcccggcgcactcaacgaagatccgaccgccgttctggacgcaaag
actgtcaatgagccgaatcttgacggcctcgactcctctgtaagcgacaacgtactgtac
aatgatatcgatgccgacaacactcccggcgaaatgtccgtaaccgaagtcaccttcggc
accacccatgtcgacttcgtcaacgacaaggtttccggcgacgcagtcatcaatcccgat
ggcactgcgaccatcactggcgtacacggcaacctggtcatcggctccgacggtgactac
acctacacggccaccgatgagacactgcccgaaggcgcaacgcctaccgaaaccttcacc
tacaccatgactgacggcgacaccgtggacaacgaccccgttgcccagagtgctgacctg
gtcatcaccgtgaacggcatcaacgatgctccgaccatcgaggccgcagctcaggaaaca
ccgttcgtggaagctggcgatgcaagcgaacaggatctgtacgcaagaggcgacgttgac
ttcaatgatgtcgacctcaacgatgaaatcgacatctcctccgaatacaacgatgacatc
agatggtccggtggcgagctgaactctgatatgattgcagcactgaccggtggcaccttc
acggcaacagccactgcccaagccgcccctggttccacaagctggacctacgacgctcac
aacttggacctcgatttcctggccgagggcgagtccattacattcagctataacatcaag
gcaaccgacagcgcaggcgctaccgattccgatactgttactatcaccataaacggttcc
aacgacggtccggttgccatcgatgatcacttcggtgaaggcgatgacactgatcccacc
gtggtgaccgtgctcactcaggacgctgtcagcgatgttcattccctgaaccttgccgat
cccgatggcgacgggtcagtgaccttctccgccttcactggcgatccgaccgccgacatg
accacttggtcagagtccgaactcggttctgaaaatcgtggatccttcagcgccatcggc
gttgcagacaacaacaatcaggaagtcgatggcgacgagatcctgcacctgacccttgat
aatggtccggctcagtccgtaacattgaccttcgaagccctgtttaacaacgcgagtgaa
actgaaggcgcctttgttcaggcttacgacagcgaagggaatgctcttggcgatcccatc
tttgttcaagcgactgctgacggcagaccaacaatcactctggatgtctttgagcaacag
tacgaccagcccatcgctgaaatcgcactgtactccgatgataatcaccagaccgacttc
ctcatccacggtgtggaatacgaaaccatgggcgaagtggattacatcttctacgaagac
cagaacgaaagtgggaccaaccccatcgtcatcgaagcagacgacatcctcgttaatgac
actgatcctgaaggcgacgctctgcacatcgcaagcgtttccgcagtgcccggcggccac
ggcacccctgtgcttgtcacagacaccaacggcaatgttaccggcgtccaattcgacgca
gatcaggacttctatggcaccgcatccttcgagtacaccgtttccgacggcgacctcacc
gatactgcgacgataactctgtatatccacccggtgaacgatgcgcctgtggcggcgaat
gacgtcaactccggccttgaagacggcagcgtctccggtaacgtgatcgacggcgacgcc
agccatgtgggccaagataccgacgtggacggcgacagcctgtccgtgaccaagttcaca
gttgatggtaccgagtacaacgcaggccagaccgcagagcttgacggcggcgacctggtc
atcaacggcgatggctcctataccttcactccggatgccaactggaacggcgatgtgccc
accgcgacctacacgatcactgatcacaacggtggcaccgactctgccgacctcgacatc
accgtcaccccggtagaagacccgaccaacattacggctcatgacaacggctccgtactt
gaagacaacccgactgaccttgttggagacaacctggtcaccaccggcaacgtgaccttt
gaggacgcagacggcaatggtgccatgagcaccacgcccacctggctcggcggcacggat
gaagacggcaacgccctctccggtccgatcggcagcttcaccatgaacgccgacggcgag
tggaccttcacggtggacaacacctcatccacggtccaaaatctggataccgatgaaagc
atcactcagaacttccaggtgaccactgccgacggtaatgataccgaaaccatcaccgtg
accatcaatggtgaggacgacaacgcagctccagtagctgtcccggatctgtatgacaac
actcccgacagcgacaccttcggcttcaacgttgttacggaaggcggcatcaacgtctcc
accaacccgtcgaactacctgctgatcgttgatacctccggttccatggagcccaacaga
atgacggcggccaaggatgccctgaaggatatgcttgaagatctgcaggacagccttgct
aaaggcgtttccaccactgtcggtatcatcgactttgattccaatgtggtccaggatacg
ttcattatcaccggaacggctggcgatgtggacagtggcagtgtctccgccggatacact
gacgcaatcgcattcatcaataccatgaaaggatatggagtcaatgaaggcaccaactat
acagcggcaattgatgccggtattgactgggtaaatgctaaccctggtaacacacaagca
gtcttcatctcagacggcagcccgaatgaaggcggaggagcttggaggagcgacagtcaa
gcccttggaaatactgatggcgttcatctgaccgctgttggcattgactatgccaacgac
aatctggtcatcattgatgaagacgattccccgataaccatctcatcgggtcaattgggc
agcctgctgtctaatatagtatcccagactgtgacgccaaacaccacggcttccggcaac
gtgctggataatgattacgacacggacaatgttgctccggtcgatgcaaaccatggcctt
gttgtcacggaagtggcgctcggagaagatgccgacacaggcttcattgaactctccgac
actactggcgacgacgcggatacggcaatcctcaccggccaatacggtactctgaccatt
cacacggatggttcctatgaatacacacctgacacggcagcagccgacgccctcaacggc
ggcgagactgagaccgagtcattcacctacacggtcgctgatagcaacggcgcgactgac
acggccacggtcagcttcctgatcaatggctccaatgatgcaccgattgcgattgacgat
agctacaccggtattgttgtaggccacactgatacggatctggtgacagacaacttcaac
ctcagtggaacgccgactacatacagcggcaatggtatctcgatctctacgaacaacggc
tatctcgtcgatatagatggtgatttgggcgttcattggggatggttcgatcgtgactcc
atcaacaatggagacaaggtccgcatcgatgtaactgactcccagggaaccgacgaaatg
cagatcaagtttacgactggtcatgatactcacaccaatgactatgctgcattcgatggc
aacgacgatgcaaagatcaaggttcactatgttggtggtggaaagaagacctacaacata
gactcggacgatctggtaaatgggacgtatacattgacaggaaccgcgagcaagaacatc
gattgggtcgaggttgaggctcctggaggcaatgacgacttcaccattgaatccgttacg
attgcagcttcaaccgccactctcgacgacctcggccccaatgtcgccaacggcgaagcc
gttggcaacctcctggacaacgactgggatgtggacaatggagacagcatccatgtcacc
gacatagatggaacaaccgttgccgacaatggcgatacgaccattgatggtgaccacggc
accctgactatcgatgcggacggtaactggtcctacgacctcgatgacgacttgtcgtct
ctgacttccagtaccaccgagcacttcgattacactgtgactgacagtcatggcgcaacc
gacactgcaagcctcgatatcccgctccatgtcgatcccaacgtggttgatactgcccac
gaaaccgatgtcaacggcataactgaacaccttatgtccggcacctccggagatgacctg
atctacatcgctgatgacgccaccatggtctcactggacgatggcggttctgacacagtg
atcattgatcccaactacatcggtaccgctggcggcgatgtgaccgtcaccggattcgag
ggagacgacagcctgatcctgaacgaccttgactccatgtcgatctccatccagcagaat
ggcagcgacactgtgctgaccattgacgacggcaacactgctacgagtgacccaagtctg
accatcacgctggaaaactacagtctccagggtgttgaagctcatgacctgccggcacat
atggatatccacggcgacagcgagtctctgggaagtctgattcaggcaatcattgattcc
cctgaatataacaactaa
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integrated database retrieval system
