Pseudodesulfovibrio sediminis: PSDVSF_21680
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Entry
PSDVSF_21680 CDS
T08380
Name
(GenBank) hypothetical protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PSDVSF_21680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psef03400
]
PSDVSF_21680
Enzymes [BR:
psef01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PSDVSF_21680
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PSDVSF_21680
DNA repair and recombination proteins [BR:
psef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PSDVSF_21680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DZR
Motif
Other DBs
NCBI-ProteinID:
BCS88926
LinkDB
All DBs
Position
complement(2265016..2265834)
Genome browser
AA seq
272 aa
AA seq
DB search
MPELPEVEVIARGLDHTLKGRTILSAEVPGLTRLSDPAESLVPRVVGRTIVRAYRRAKVL
LVEMDDRSTLVFHLKMTGRVVHGQTRPMNKHDRIAFNLDDGSQLVFSDMRKFGYVRSFTP
GELGNWEFLRKVGPEPLETEAALMAERVLHRKSAIKGLLLNQTVVAGVGNIYADESLFRA
GIHPETKGSRIGRARAETLFTELQAVLKLAIKENGSSISDYVNASGDAGAFQNSFNVYGK
KGQQCVQCGTVLKSTTVAGRTSTFCPQCQRKR
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgcctgaagtcgaagtcattgcacgcggtcttgaccacaccctgaaagga
cgcaccatcctcagcgccgaggtcccgggcctgaccaggctcagcgatccagccgagtcg
ttggtgcccagggttgtcgggcgaaccattgtacgcgcctaccgtcgagccaaggtgcta
ctggttgaaatggatgaccgctccacccttgtttttcatctcaagatgacgggccgggtg
gtgcatggacagacgcggccgatgaacaagcatgatcgtatcgctttcaatctggacgat
gggagtcagctcgttttttcggatatgcgcaagttcggctatgtacgctcgtttacgccc
ggagagcttgggaactgggaatttctgcgcaaggtcgggccggagccgcttgaaaccgag
gccgcactcatggccgagcgtgtcctgcatcgaaaatcggccatcaagggattgctcctc
aaccagaccgtggtggccggggtggggaacatctatgccgatgaatccctgtttcgggcg
ggcattcatcccgaaaccaaggggagccgcatcggacgggccagggccgagactctgttc
accgagttgcaggccgtcctcaagctcgctatcaaggagaacggcagctccatttcagat
tatgtgaatgccagcggcgatgccggggcgtttcagaacagcttcaatgtgtatggcaaa
aaagggcagcaatgcgttcagtgcggcacagtgctcaagtcgaccacagtggccgggcgc
acatcgacgttttgtccccaatgtcagcgcaagcgataa
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