Pseudodesulfovibrio sediminis: PSDVSF_24560
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Entry
PSDVSF_24560 CDS
T08380
Name
(GenBank) HD family phosphohydrolase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSDVSF_24560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psef03019
]
PSDVSF_24560
Enzymes [BR:
psef01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
PSDVSF_24560
Messenger RNA biogenesis [BR:
psef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PSDVSF_24560
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_NucTran2_2
MIOX
PolyA_pol_RNAbd
HDOD
Motif
Other DBs
NCBI-ProteinID:
BCS89214
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All DBs
Position
2571184..2572518
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AA seq
444 aa
AA seq
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MSQPFKDAVGFCKTIMRNGYDAYVINVRLQALTLDETGSEKELDICTEAAFDELQKYFPN
IEESEDMSILGSLTEGGVQYFFYPASTEEAAYTDEAVAMMTPRLLKKLEQRGDIPLSSVC
PFIPKAKDLYADFADFAEGQIRFKGVPDQALKKDYSLAYRALRFAANFDKEIEANSWAAI
VRNVRRVLDYVPMADFLDEWRKVEAEAMHKFFRLLFDAMLLHGLIPEIAALSRVTQIKNP
EEGTEETVLEHTLDVMKAYPEELPYDWFGTVACLLHDVGKLYTAEYYDEKWNFLQHHRVG
AKVARKILKRLRFEEQDIDLICDLVQNHMRPQFMLTDKGIRRLRSLDEYPRIMEMVKADI
KARGGSWREFNHNLKMAERADIPEEEIEPFLDGNRIMELSKLKPGPAIGKIRERLLAAQV
RDDVQTVEDAEAFVLAYVEEHRLY
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcctttcaaagatgctgtcggcttttgtaaaacgatcatgcgcaacggatac
gatgcgtatgtgatcaatgttcgtcttcaggccctgaccctggacgaaacaggcagcgaa
aaagaactcgatatctgcaccgaagctgcctttgacgagcttcagaaatatttccccaat
attgaagagtctgaggacatgagcatactcggctccctgaccgagggaggcgtgcagtat
ttcttctacccggcatccaccgaagaggcggcctacacggatgaagccgtggccatgatg
actccccgtctgctcaagaaactcgagcagcgtggcgatatcccgttgtcttcggtctgc
ccgttcattcccaaggccaaggacctgtacgcggactttgcggactttgccgagggccag
attcgtttcaagggcgtgccggatcaggcactcaagaaagattattcgctggcctaccgc
gccctgcgctttgccgccaacttcgacaaggaaatcgaagccaactcctgggccgccatt
gtgcgcaatgtccgtcgggtgctcgactatgtccccatggccgatttcctggacgagtgg
cgcaaggtcgaagccgaggccatgcacaagtttttccgcctgttgttcgacgccatgctc
ctgcacgggttgatccccgagatcgcggctctgtcccgcgtcactcagatcaagaacccg
gaagaagggaccgaggaaaccgtgcttgagcacaccttggacgtcatgaaggcgtacccg
gaagagctgccgtatgactggttcggcaccgtggcctgcctgctgcatgatgtgggcaag
ctttatacggcagaatactatgacgagaagtggaatttccttcagcatcaccgcgttggt
gccaaggtggcccgcaagatcctcaagcgacttcgtttcgaggagcaggacatcgacctg
atctgcgatctggtgcagaaccatatgcgcccgcagttcatgctcacggacaagggcatc
cgccgtctgcgttccctggacgagtacccgcgcatcatggaaatggtcaaagcggacatc
aaggcccgtggcggctcctggcgtgagttcaaccacaacctcaagatggctgaacgcgct
gatatcccggaagaggagatcgaacccttccttgacggcaaccgcatcatggaattgtcc
aagctcaagcccggcccggccattggcaaaatccgcgaacggctgctcgcagcccaggtc
cgcgacgatgtccagaccgttgaggacgccgaggcatttgtgctcgcctatgtggaagag
caccgtctgtactag
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