Pseudodesulfovibrio sediminis: PSDVSF_24670
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Entry
PSDVSF_24670 CDS
T08380
Symbol
rocD
Name
(GenBank) ornithine aminotransferase
KO
K00819
ornithine--oxo-acid transaminase [EC:
2.6.1.13
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef00330
Arginine and proline metabolism
psef01100
Metabolic pathways
psef01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09100 Metabolism
09105 Amino acid metabolism
00330 Arginine and proline metabolism
PSDVSF_24670 (rocD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
psef01007
]
PSDVSF_24670 (rocD)
Enzymes [BR:
psef01000
]
2. Transferases
2.6 Transferring nitrogenous groups
2.6.1 Transaminases
2.6.1.13 ornithine aminotransferase
PSDVSF_24670 (rocD)
Amino acid related enzymes [BR:
psef01007
]
Aminotransferase (transaminase)
Class III
PSDVSF_24670 (rocD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Aminotran_3
DegT_DnrJ_EryC1
Cys_Met_Meta_PP
Aminotran_1_2
Beta_elim_lyase
PUFD
Motif
Other DBs
NCBI-ProteinID:
BCS89225
LinkDB
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Position
complement(2586862..2588061)
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AA seq
399 aa
AA seq
DB search
MKSDQYILLEDEFGAHNYKPLDVVIERGEGIWVWDVDGKKYLDCLSAYSAINQGHCNKKI
MAAMVEQAKRLTLTSRAFRNDQLGPLYKELCDLTNSHKVLPMNSGAEAVETAIKAVRKWG
YQVKGVPENKAEIIVCRNNFHGRTISIISFSTDPVSTTGFGPFTPGFKIVDFGDTAALED
AITDNTVAFMVEPIQGEAGVIIPPEGYLREVRRICTEKGIVLIFDEIQTGLGRTGAMLAE
EHEGVEADLTLIGKALSGGFYPVSAVLSNTEVLGVLKPGEHGSTFGGNPLACAIARAALK
VLVEDGLIENAREMGTYFLEGLKQIDNPKIKEVRGRGLLIGLEFHDTAGGARQYCEQLKD
AGLLCKETHQTIIRFAPPLVITKEEIDWALEKITPILSR
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgaagtccgatcagtatattttgctcgaagacgaattcggcgcacataattacaagccc
ctcgatgttgtcatagaacggggcgaaggcatttgggtctgggacgtggacggcaagaaa
tatctcgactgcctctccgcatactccgccatcaatcaggggcactgcaacaagaaaatc
atggccgccatggtcgaacaggccaaacggctcaccctgacctcgcgggcgtttcgcaac
gatcagctcggcccgctctacaaggagctgtgcgatctgaccaattcgcacaaggtgcta
cccatgaactccggggccgaggccgtggagaccgccatcaaggccgtgcgcaagtggggc
taccaggtcaagggtgtcccggagaacaaggccgaaatcatcgtctgccgcaacaacttc
cacggcaggaccatctccatcatttccttctccaccgatccggtctccaccacggggttc
ggcccgttcacccctggattcaagatcgtggatttcggtgacaccgccgcgcttgaagac
gccatcaccgacaacaccgtggccttcatggtcgagccgatccagggcgaagccggggtc
atcatcccgcccgagggctatctccgggaagtccggcgtatctgcaccgaaaaaggcatc
gtgctcatctttgacgaaatacaaaccggcctgggacgcaccggcgcaatgctggccgaa
gagcacgaaggggtcgaggcggacctcaccctcataggcaaggcgctgtccggtgggttc
taccctgtctcagccgtgctctccaacaccgaagtgctcggcgtgctcaagcccggcgaa
cacggctccacctttggcggcaacccgctggcctgcgccattgcccgcgccgccctcaag
gtgctcgtcgaggacggactcatcgaaaatgccagggaaatggggacctattttttggaa
ggcctcaagcagatcgacaatccgaaaatcaaggaagtgcgcggtcggggcctgctcatc
ggtctcgaatttcacgacactgccggcggcgcacgacagtattgcgaacagctcaaggac
gccggactgctctgcaaggaaacgcaccagaccatcatccggttcgcgcccccactcgtg
atcaccaaagaagagatcgattgggcgctcgaaaaaatcacccccatcctgagccggtaa
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