Pseudodesulfovibrio sediminis: PSDVSF_25670
Help
Entry
PSDVSF_25670 CDS
T08380
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef00300
Lysine biosynthesis
psef00470
D-Amino acid metabolism
psef01100
Metabolic pathways
psef01110
Biosynthesis of secondary metabolites
psef01120
Microbial metabolism in diverse environments
psef01230
Biosynthesis of amino acids
Module
psef_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PSDVSF_25670 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PSDVSF_25670 (dapF)
Enzymes [BR:
psef01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
PSDVSF_25670 (dapF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
Pro_racemase
Motif
Other DBs
NCBI-ProteinID:
BCS89325
UniProt:
A0ABM7P8K1
LinkDB
All DBs
Position
complement(2693326..2694177)
Genome browser
AA seq
283 aa
AA seq
DB search
MTIFGTSVSFYKMQGCGNDFVIIDNRELGVPESSMKDWAIALCARAFGIYADGLFFLENS
DDPDQDYRWHFYNSDGSRAEMCGNASRCAGKLAHAIGLAPAEHVFGTDAGSIKAQVLLDG
PDAGRVKVQLTPPQNTETNIVLDIDGEPLTVHYSDTGVPHVVVFVDDIKTLDIMDIGPKI
RYHEHFAPAGTNVNFAQVLDRNTMLLRTYERGVEGETFACGTGASATQLLANALGLTDEY
ANLTTTGNEVLTVFLEEGNIFLQGAAELTFKGEFYLEALGLSV
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgaccatattcggcacatccgtttcattctacaagatgcagggttgcggcaacgacttc
gtcatcatcgacaaccgcgaactgggcgtccccgagtcctccatgaaggactgggccatc
gccctgtgcgcccgcgccttcggcatctatgcagacggcctgttttttctggaaaactcc
gatgatcccgatcaggattaccgctggcatttctacaactccgacggctcccgcgccgag
atgtgcggcaacgcctctcggtgtgccggaaagctcgcccacgccatcgggctggctcct
gccgaacatgtcttcggcacagatgcagggtccatcaaggcccaggtgctgctcgacggc
ccggatgccggtcgcgtcaaggttcagcttaccccgccccagaacacggaaaccaacatc
gtgctggatatcgacggcgagccgctgaccgttcactactccgacaccggcgtgccccat
gttgtcgtgttcgtcgacgatatcaagacgcttgatatcatggatatcggtcccaaaatc
cgctaccacgagcacttcgcccctgccgggaccaacgtcaactttgcccaggttctcgac
aggaacaccatgctgctgcgcacctacgaacgcggggtggagggtgagacctttgcctgc
ggcaccggcgcctcggctacccagctgctagccaacgcgctcggtttgaccgacgagtat
gccaacctgaccaccaccggcaatgaagtactgaccgtctttctggaagaagggaacatc
tttctccagggagcagccgaactgacattcaagggagagttctatctcgaagctcttggg
ctgagcgtatag
DBGET
integrated database retrieval system