Pseudodesulfovibrio sediminis: PSDVSF_26140
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Entry
PSDVSF_26140 CDS
T08380
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psef
Pseudodesulfovibrio sediminis
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psef03032
]
PSDVSF_26140 (topA)
03400 DNA repair and recombination proteins [BR:
psef03400
]
PSDVSF_26140 (topA)
Enzymes [BR:
psef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PSDVSF_26140 (topA)
DNA replication proteins [BR:
psef03032
]
Prokaryotic type
DNA Topoisomerases
PSDVSF_26140 (topA)
DNA repair and recombination proteins [BR:
psef03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PSDVSF_26140 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BCS89372
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Position
2742480..2744897
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AA seq
805 aa
AA seq
DB search
MSKDLIIVESPAKVKTISKFLGKNYIVDASVGHVRDLPTRDLGVDEENNFAPRYEVIQGK
EDVVKRLRSAAKKADTVFLAPDPDREGEAIAWHVAELLKPVNDNIRRIQFNEITSRAVKE
ALENAQELNEDLFDSQQARRILDRLVGYKISPILWKNVKRGISAGRVQSVALKILVEREK
ERRAFRADEYWPFKVLLEGGNPPPFWMDLHKLSGKAVKPGVNHVGNQEQAESLQQALETG
EFVVDSVVEKQRKRNPLPPYITSTLQQDANRRMGYSAKRTMSIAQRLYEGVELGKQGTTA
LITYMRTDSVRIAKDAQDAAKKLILERFGADYYPPKTRHFKTKGSAQDAHEAIRPVDVSV
TPDDVKSYLPSEQHKLYRLIWQRFVASQMAVATFWDTTVLVSAPETIWRAKGERLLFPGF
LAAMDKAKAEDDTELPKLAQGDVLQLNELKKEQKFTQPPPRFSEASLVKTLEELGIGRPS
TYAAIISTLLDREYARQEEKRFVPTELGFTVSDQLSEHFQALMDVGFTAQMESLLDDVAD
GKKDWEDLLKAFGDDFYPTLEKARTEMARSQQVTDITCENCGKPMAIKFGRTGEFLGCTG
FPSCRTIKNFTRDEQGAIQVVEREKPEDTGVKCEKCGRPMAIKQSRRGEFLGCTGYPDCK
SIVNFTRDADGVIQVVESEKPEVVGTCPECGGELLLKKARTGSRFIACSNYPDCTYAAPF
STGVPCPKEGCEGELVEKSSRRGKLFYSCSTYPKCDYAVWNWPIAEECPKCKHPILTRKT
TKDKGEHIACPKKGCGYTRPLEGEE
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatctgattatcgttgagtcccctgccaaagtgaaaaccatttccaaattt
cttggaaagaactatatcgtcgatgcctcagtcggccatgtccgcgatctgcctacccgc
gacctcggtgtggatgaagagaacaacttcgctccccgctatgaagtcattcagggcaaa
gaggatgtcgtcaaacgcctgcgcagcgcagccaagaaggcggacaccgtcttcctcgca
cctgaccccgaccgcgagggtgaggccattgcctggcatgtggccgagctcctgaaaccg
gtcaatgacaatatcaggcgtatccagttcaacgaaattacctcccgtgcagtcaaagag
gcgttggaaaacgcccaggaactcaacgaggacctgttcgactcccagcaggcccgtcgc
attctggaccggctggtcggctacaagatttctcccattctgtggaagaacgtgaagcgc
ggtatctccgcgggacgcgtacagtccgtcgcgctcaagattctggtggaacgcgaaaag
gaacgtcgtgccttccgggccgatgagtactggccgttcaaggtactgcttgagggcggc
aatccgccgccgttctggatggatctgcacaagctgtccggcaaagcggttaagcccggc
gtcaatcatgtcggcaatcaggaacaggccgagtccttgcagcaggctttggagaccggt
gagttcgtcgtggattccgtggtcgagaagcagcgcaaacgcaatccgctgcccccgtat
atcacctccaccctgcagcaggacgccaaccggcgcatgggctactccgccaagcggacc
atgtccattgcccagcgtctgtacgaaggtgtggaactcggcaagcagggcaccacggcg
ctgatcacctatatgcgtaccgactccgtgcgtatcgccaaggacgctcaggatgcggcc
aagaagctcatcctcgaacgcttcggcgcagactactatccgcccaagacccgacatttc
aagaccaagggcagcgcacaggacgcgcacgaagcgatccgtcccgttgatgtctctgtc
acgcccgatgacgtgaagtcctatctcccgtcggagcagcacaaactctatcggctcatc
tggcagcggtttgttgcctcgcagatggccgtggccactttctgggacaccacggttctg
gtcagcgccccggagacaatctggcgtgccaagggcgaacggctgctcttccccggtttc
ctggctgccatggacaaggccaaagccgaagacgacaccgaactgcccaagctggcccag
ggcgatgtgctgcaattgaacgaactgaagaaagagcagaagttcacccagccgccgccg
cgattctctgaagcctcgctggtcaagactctggaagaactgggcattggccgtccgtcc
acttatgccgcgatcatctccacgttgctggaccgcgaatacgcccgtcaggaagagaag
cgcttcgtgcccacggaactcgggttcactgtttccgatcagctctccgaacattttcag
gcactcatggatgtcggcttcaccgcacagatggagtctctgctcgatgacgtggctgac
ggcaagaaggactgggaagacctgctcaaggcgtttggtgatgatttttatcccaccctg
gagaaggcccgtaccgagatggcccggagccagcaggtcacggacatcacctgcgagaat
tgcggcaagcccatggccatcaagtttggccgtaccggcgaatttctgggctgcaccggg
ttccccagctgccggacaatcaagaactttacccgtgacgagcagggtgccatccaggtt
gtggagcgtgaaaagcccgaagacaccggcgtgaaatgcgagaagtgtggtcgccccatg
gctatcaagcagtcccgtcgaggggaattccttggctgcaccggctacccggattgcaag
tccatcgtcaactttacccgtgatgcggacggggtcattcaggtggttgaatccgagaag
cccgaagtggtcggcacctgccctgaatgcggcggcgagttgctgctcaagaaggcgcgc
actggttcccggttcatcgcctgttccaattatcctgactgcacctatgccgcgccgttt
tccaccggcgttccgtgtcccaaggagggatgcgagggcgaactggtcgagaaatcctcg
cgccggggcaagctgttctattcctgctccacctatcccaagtgcgactacgctgtctgg
aactggcccattgccgaggaatgccccaagtgcaagcatcccatcctgacgcgcaagacc
accaaggataagggcgagcatattgcctgtcccaagaagggctgcggctacacccgtcct
cttgaaggcgaggagtag
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