Pseudodesulfovibrio sediminis: PSDVSF_26450
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Entry
PSDVSF_26450 CDS
T08380
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef03030
DNA replication
psef03430
Mismatch repair
psef03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSDVSF_26450 (dnaE)
03430 Mismatch repair
PSDVSF_26450 (dnaE)
03440 Homologous recombination
PSDVSF_26450 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psef03032
]
PSDVSF_26450 (dnaE)
03400 DNA repair and recombination proteins [BR:
psef03400
]
PSDVSF_26450 (dnaE)
Enzymes [BR:
psef01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSDVSF_26450 (dnaE)
DNA replication proteins [BR:
psef03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSDVSF_26450 (dnaE)
DNA repair and recombination proteins [BR:
psef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSDVSF_26450 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BCS89403
LinkDB
All DBs
Position
complement(2778792..2782337)
Genome browser
AA seq
1181 aa
AA seq
DB search
MAEFVHLHVHTEYSLLDGAIRIKDLLSRAKDLGMPAVAITDHGSMFGAVTFYMAAREIGI
KPIIGCEVYVAPGDIDDENAHHRKERGGGYHLVLLAKNRKGYRNLIKLVSLGHLEGFYYK
PRVCKNLLKKHSEGLVALSACLAGEVPRVLMNEGLDAGVEMARTYESIFPGNFYLELQDN
GIGKQVRLNELLIKCAEQTGLPLVATNDCHYLTAEDYEAHDTLLCVQTQTTVDSEKRFRM
DTQELYFKTPEEMETAFAHVPEAIQNTQRIAEMCNLEIELGNYYFPEYELSEGVSDMDEE
FDKLCRAGLKERLNTIEYEVDEKVYWDRLDYELGVITEMGFPAYFLIVQDFINWAKRNRI
PVGPGRGSAAGSIVAWSLRITNIDPLPYDLLFERFLNVERVSMPDIDVDFCERRRLEVVK
YCSEKYGHDRVAQITTFGTMKTKAVIKDVGRALGMDYKDTDRIAKLIPDDPALIAKLLGV
EKAKITVPNAVKAVAELDDMVATDPKVEKLIDISTRLEGLCRHASTHAAGVVISDRPMTD
YLPLYKGKKGEIVTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIREQGKKAPNLDTL
ALDDPDTYAIFAKGDTDGIFQVESSGMRKYLRMLRPDCFEDIVAMLALYRPGPLGMIGAH
GVSMVDEFIMRKHGDIEVTYPHESLTDTLKPTYGVMVYQEQVMATAMTVANYSLGEGDLL
RRAMGKKIAEEMAKQRSRFLEGSRENKIPDKIANEIFDTMEKFAAYGFNKSHSAAYALIS
YHTAYLKAHFPVEFMAALMSTEMNNTEKIIMYVNACRDMDITVKQPNINAGQARFSVLDG
DILFAMAAIKNVGEEAINEIVVVREADGPFKNIFDFCERVNLRRVTKRVLESLIKAGALD
CFDRSRAALLEDLEKAVAIGQKKTKEKESGMLNMLDMLGGGESAEPAHQPTCSECEEFDD
REKLTLEKEVLGFFLSGHPLLAYRQDMARLRTSTLEECKTIPNGTEVRVAVIIPDYKQFI
TRKGDPMAFCVAEDLTCSGEVTMLPNVYADARELIDADRPLMIQGKIDIREEQAGPEDAP
KSAKILADKVTFLADAVKGSDKPVPLWIGERNAVDPHLNKLKTILQRYPGTTSVTLGVIT
KDSVVNLKLGNGWTVFPSREFWKDIEAWQNGDALKHRSSNN
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaatttgttcatcttcatgtccatacggagtacagtctcctggacggtgccata
cgcatcaaagacctgctttcgcgggccaaggaccttggcatgcctgccgtggccatcacg
gaccacggctccatgttcggtgccgtaaccttttacatggcagcccgtgaaatcggcatc
aaacctatcatcggctgcgaagtctacgtggctcccggcgacatagatgatgaaaacgcc
caccaccgtaaggaacgcggcggtggataccacctcgtcctgctggccaaaaaccgcaaa
gggtaccggaacctcatcaagctggtctcactggggcacctcgaagggttctactacaag
ccccgtgtatgcaaaaatctcctgaaaaaacactcagaaggccttgtcgccctgtccgcc
tgcctggctggcgaagtcccacgcgtactcatgaacgagggcttggatgccggcgtggag
atggccaggacctacgagtccattttccccggaaacttctatctcgaactccaggacaac
ggcatcggcaagcaggttcgcctcaatgagctgctcatcaagtgcgcggagcagaccggt
ctgcccctggtggccaccaatgactgccactatctgaccgccgaagactacgaggcccac
gacaccctgctctgcgtccagacacagaccacggtggactccgagaaacggttccgcatg
gacacgcaggagttgtatttcaagacgcccgaggagatggagaccgccttcgcgcatgtg
ccggaggccatccagaacacccagcgcatcgccgagatgtgcaatctcgaaatcgaactg
ggcaactactatttccctgaatatgaattgtccgaaggcgtctcggacatggacgaggag
tttgacaagctctgccgggctggtctcaaggaacggctcaacaccatcgaatatgaagtg
gacgaaaaggtctactgggatcgcctcgactatgagctgggcgtcatcaccgagatggga
ttcccggcctacttcctcatcgtgcaggatttcatcaactgggccaagcgcaaccgcatt
cccgtggggccgggccgtggctctgccgccggttccattgttgcctggtcgctcaggatc
acgaacatcgacccgctcccgtatgatctgctgttcgagcgcttcctcaacgtcgagcgt
gtgtccatgcctgatatcgacgtggacttctgcgagcgacgccgtcttgaggtcgtgaag
tactgctccgaaaagtacggccatgaccgagtggcacagatcaccaccttcggcaccatg
aagaccaaggcggtcatcaaggacgtgggccgtgccctgggcatggactacaaggacacc
gaccgcatcgccaagctcatcccggacgatcccgcgctcatcgccaagctgctgggcgtg
gaaaaggccaagatcaccgtccccaatgccgtcaaggccgtggccgaactggacgacatg
gtggccaccgaccccaaggtcgaaaaactcatagatatttcaacacggctcgaaggcctc
tgccgtcacgcgtccacccatgcggcgggcgtggtcatctccgacaggcccatgaccgac
taccttcctctctacaaagggaagaagggtgaaatcgtgacccagttcgacatgaaaaag
gtcgaaaaggtcggcctgatcaagttcgacttcctgggcctgcgcaccatgaccgtaatt
gaggactgtctggacatcatccgcgagcagggcaaaaaagcgcccaacctcgacaccctg
gccctggacgatcccgacacctacgccatctttgccaagggcgacaccgacggcatcttt
caggtggaatcatccggcatgcgcaaatatctccgcatgctgcgcccggactgctttgaa
gacatcgtggccatgctcgcgctctaccgccccggccctctgggcatgatcggcgcccac
ggggtgagcatggttgacgagttcatcatgcgcaaacacggagacattgaggtcacctat
ccgcacgaatctctgacagacaccctgaagcccacctatggcgtcatggtctatcaggag
caggtcatggccaccgccatgacggtcgccaactattcactgggtgaaggtgacctgctg
cggcgtgccatgggtaagaagattgccgaggaaatggccaaacaacggtcccgtttcctt
gaaggttcccgcgagaacaagatccccgacaagatcgccaatgaaatcttcgacaccatg
gagaaattcgcggcgtacggtttcaataaatcccactccgcagcctacgcgctgatctcg
tatcatacagcctatttgaaggcgcacttcccggttgaattcatggccgccctcatgagc
acggaaatgaacaacaccgagaagatcatcatgtacgtcaacgcctgccgcgacatggac
atcacggtcaagcagccgaacatcaatgccggtcaggcccgcttctccgtgctggacggc
gacatcctgttcgccatggccgccatcaagaacgtgggcgaggaagccatcaacgagatc
gtggtcgtgcgtgaggcagacggcccgttcaagaatattttcgatttctgcgagcgggtg
aacctgcgccgcgtgaccaagcgcgtgcttgaatcccttatcaaggccggggcactggac
tgcttcgaccggtcacgggccgcgctcctcgaagatctggaaaaggctgtcgccattggc
cagaagaagaccaaggaaaaggaatccggcatgctgaacatgctggacatgctcggtggc
ggcgaaagcgcggaaccggcccaccagcccacgtgctcggaatgcgaggaattcgacgac
cgggagaaactgactctggaaaaggaagtcctcggtttcttcctgtccggtcacccgctg
ctcgcctaccggcaggacatggcccgactccgcacctccacccttgaggaatgcaagacc
attcccaacggaactgaggtccgcgtggccgtcattatcccggactacaaacaattcatc
acccgcaagggcgaccccatggctttctgcgtggccgaagatctgacctgctcgggcgaa
gtgaccatgctccccaatgtctacgccgacgcccgcgagctcatcgacgcggaccgtccg
ctcatgattcagggaaagatcgatatccgcgaagaacaggccggaccggaggatgccccc
aaatccgccaagattctggccgataaagtcacattcctggccgatgcggtcaaaggctcg
gacaaacccgtgcccctgtggatcggcgaacgcaacgccgttgacccccatctcaacaaa
ctcaagaccattttacagcgctatcccggcaccacctccgtcacgttgggcgtcataacc
aaagactccgtggtcaacctgaaactcggcaatggctggaccgtcttccccagccgcgag
ttctggaaggacattgaggcgtggcagaacggcgatgcgctcaaacataggtcgagcaac
aactaa
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