Pseudodesulfovibrio sediminis: PSDVSF_26710
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Entry
PSDVSF_26710 CDS
T08380
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSDVSF_26710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psef03019
]
PSDVSF_26710
03009 Ribosome biogenesis [BR:
psef03009
]
PSDVSF_26710
Enzymes [BR:
psef01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSDVSF_26710
Messenger RNA biogenesis [BR:
psef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSDVSF_26710
Ribosome biogenesis [BR:
psef03009
]
Prokaryotic type
rRNA processing factors
PSDVSF_26710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CENP-Q
DUF5351
Motif
Other DBs
NCBI-ProteinID:
BCS89429
LinkDB
All DBs
Position
complement(2825082..2826551)
Genome browser
AA seq
489 aa
AA seq
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MTTKKRRQKMFISVLPGEQVEVVIAEEGKVNEYYVEMVHQAKTKGNIYKGYIHNIDNGLQ
AAFINYGAERNGFLQIDEVHPEYYLGSPATKKGQRFPLMQKVLKAGQEVLVQVVKEPTGK
KGAFLTSYLSLPGRSFVYTVGRSQMGVSRKIENEKERTRLKKALESFETTEGVGLIARTA
AVGQSKAALERDYKYLNRLWTDIRANAQKEKAPAIVYKELGLAARAVRDYLTSDVTEVWV
DDKETYDQIHQFVKLAFPRKNNLVRLHEDPDLSLLERFNLVKQVEEIYSREASMPSGGRL
VFDATEALTAVDINSGKIGGERNFQKMALKTNVEAAREIARQLRLRDIGGQVVIDFIEMK
NPKDCREVEKVMRAEMKNDRARTDVSRISSFGLMELVRQRLGSSAIAISTEPCPCCKGTG
IRRNLEWQALQALKEIHREVRKPGTDVVEHDCEEELAIYLLNNKRGILADLEQRYGKEIH
VDIEYEYDE
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccaagaaaagacgacagaagatgttcatctccgtactgccaggagaacaggta
gaggtcgttattgccgaagaaggcaaggtaaacgaatactatgtggagatggtgcaccag
gccaagaccaagggcaacatctacaaaggctacattcacaacatcgacaacggccttcag
gccgcgttcatcaactacggcgcagaacgtaacggcttcctccagatcgacgaagttcac
ccggaatactacctgggcagtcctgccaccaagaaaggccagcgcttcccgctcatgcag
aaagtgctcaaggccggtcaggaagtcctggtccaggtggtcaaggaacccaccgggaaa
aaaggtgcgttcctgacatcctatctttccctgcccggacgcagcttcgtctacaccgtg
ggccggagccagatgggcgtttcccgcaaaatcgagaatgaaaaggaacggacacgcctc
aagaaggccctggaatcctttgaaaccacagaaggtgtcggcctcatcgcccgcaccgcg
gctgtgggccagtccaaagccgcccttgaacgcgactacaaatatctcaatcgcctctgg
accgacatccgggccaatgcgcaaaaagaaaaggccccggccatcgtctacaaggagctg
ggtctggctgcccgcgcagtgcgcgactacctgacctccgacgtgaccgaggtgtgggtg
gatgacaaggaaacctacgatcagatccaccagttcgtaaaactcgccttcccgcgcaag
aacaatctcgttcgcctgcacgaagatccggacctctccctgctggagcggttcaatctg
gtcaagcaggtggaagaaatttactcccgtgaagcatccatgccgtcaggaggccgtctg
gtcttcgacgccacagaagccctgaccgccgtggacatcaactccggcaaaatcggcgga
gaacgcaatttccagaagatggcactgaagaccaacgtggaagccgcccgggagatcgcc
cgccagctcaggctgcgcgacatcggcggccaggtggtcatcgacttcattgaaatgaag
aaccccaaggattgccgcgaggtcgaaaaggtcatgcgcgcggagatgaaaaacgaccgc
gccagaaccgatgtcagccgcatttcctcgttcggactcatggagctggtccgccagcgc
ctcggctcgtccgcaatcgccatctccacagaaccctgcccgtgctgcaaaggcaccggt
atccgccgcaaccttgagtggcaggcccttcaggccctcaaagagattcaccgcgaagtc
cgcaagccgggcaccgacgttgtggagcacgactgcgaggaagaactcgccatctacctc
ctcaacaacaaacgcggcatcctggccgatctggagcaacgctacggcaaggaaatccac
gtggacatcgaatacgaatacgacgaatag
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