Pseudodesulfovibrio sediminis: PSDVSF_29080
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Entry
PSDVSF_29080 CDS
T08380
Name
(GenBank) hypothetical protein
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef03030
DNA replication
psef03430
Mismatch repair
psef03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSDVSF_29080
03430 Mismatch repair
PSDVSF_29080
03440 Homologous recombination
PSDVSF_29080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psef03032
]
PSDVSF_29080
03400 DNA repair and recombination proteins [BR:
psef03400
]
PSDVSF_29080
Enzymes [BR:
psef01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSDVSF_29080
DNA replication proteins [BR:
psef03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSDVSF_29080
DNA repair and recombination proteins [BR:
psef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSDVSF_29080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
BCS89666
LinkDB
All DBs
Position
complement(3085669..3086661)
Genome browser
AA seq
330 aa
AA seq
DB search
MPRPKYLFLICPDPQLIKAQVDERLTASGQNDWEKKAFWGDDDEPLPATFWTDLTIKSLF
PQPKALIVRRAHTLKADQWDKLDAGVKGLGSDIFPIFCLEGEWKSKKAPVPPALARRGLF
KKAKKDGWIWESQGLDQRSLTDYVKAWAAKAGLTFEPGAGQALTYALPTDAVAVRLELDK
IELAAGDEKIVRKEFVNLVAQTGEMAFFDLMDALGRPGAEAAVWKRVINDHSKSAKDQML
FNLIGFLASQARMYWMLAHGEQPKGNPYMLKKKAPIARQLGAEGVARMIDLALEAELSLK
TGERKYEEALDILMAGLIDLFQPKRPAKRY
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
gtgccccgcccgaaatatcttttcctcatctgcccggacccgcagcttatcaaggctcag
gtagacgagcgtctcacggcatccggccagaacgactgggaaaaaaaggcgttctggggc
gatgacgacgaaccgctgccagccacgttctggaccgatctaactatcaaatccctgttt
ccgcagcccaaggcactcatcgtccgccgggcgcacaccttgaaagcggaccagtgggac
aaactcgatgcgggcgtcaagggactgggcagcgacatctttccgatcttttgccttgag
ggggaatggaagagcaaaaaggctcctgttcccccggcgctcgcccggcgaggactattc
aagaaggccaaaaaagacggctggatatgggagtcacaagggctcgaccagcgctctctg
accgactacgtcaaggcgtgggcggccaaggccgggttgacgttcgaaccgggagcggga
caggcgctgacatacgccctgcccacggacgccgtggcagtccgactggagctggacaag
atcgagctggcggcgggcgacgagaagattgtccgcaaggagttcgtcaatcttgtggcc
cagaccggcgagatggcgttcttcgacctcatggacgcgctggggcgccccggtgccgag
gccgccgtgtggaagcgggtcattaacgaccactccaagtcagccaaggaccagatgctt
ttcaacctcatcggatttctggccagtcaggcccgcatgtactggatgctcgcccacgga
gaacaacccaaggggaatccgtacatgctcaaaaagaaagcacccatcgcacgacagctc
ggagccgaaggcgtggcccgcatgatcgacctcgcgttggaggcagagctttccctcaag
accggtgaacgcaagtatgaagaagcgctcgatatcctcatggccggactcatcgatctg
tttcaacctaaacgcccggccaaacgctactaa
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